Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V4U93_RS01485 Genome accession   NZ_CP144755
Coordinates   314512..316311 (-) Length   599 a.a.
NCBI ID   WP_172826501.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 309512..321311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS01460 (V4U93_01460) - 309763..311304 (+) 1542 WP_056936437.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  V4U93_RS01465 (V4U93_01465) - 311324..311950 (+) 627 WP_129584106.1 hypothetical protein -
  V4U93_RS01470 (V4U93_01470) - 312101..312988 (+) 888 WP_035147005.1 zinc ABC transporter substrate-binding protein -
  V4U93_RS01475 (V4U93_01475) - 312985..313665 (+) 681 WP_035147009.1 ATP-binding cassette domain-containing protein -
  V4U93_RS01480 (V4U93_01480) - 313700..314476 (+) 777 WP_011373994.1 metal ABC transporter permease -
  V4U93_RS01485 (V4U93_01485) pepF 314512..316311 (-) 1800 WP_172826501.1 oligoendopeptidase F Regulator
  V4U93_RS01490 (V4U93_01490) - 316511..317698 (+) 1188 WP_035147014.1 LCP family protein -
  V4U93_RS01495 (V4U93_01495) - 317843..319078 (+) 1236 WP_011373997.1 nucleoside transporter C-terminal domain-containing protein -
  V4U93_RS01505 (V4U93_01505) - 319384..320115 (+) 732 WP_011373998.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67613.39 Da        Isoelectric Point: 4.4972

>NTDB_id=934710 V4U93_RS01485 WP_172826501.1 314512..316311(-) (pepF) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MHKLPTRSEVPENSTWDLSTIFKNNSDFEAAVAALKQALPALEQYNQPFKTADQLVITIEQVLTLFRQLETVYVYASMKN
DQDTTNTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNEPALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QATAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSYLTR
HNQPYVYGDYPIFIAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNARYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQISTNQPGALDNYLTYLKNGSASY
PIETMQKAGVDMTNADYLERAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=934710 V4U93_RS01485 WP_172826501.1 314512..316311(-) (pepF) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATTCACAAATTACCCACACGATCCGAAGTCCCTGAAAACTCAACCTGGGATCTCAGTACCATTTTCAAAAATAACTCAGA
TTTTGAGGCAGCTGTTGCGGCATTGAAACAAGCACTACCAGCACTTGAACAATATAACCAACCGTTTAAAACGGCTGATC
AACTCGTAATAACGATTGAACAAGTGCTAACGCTCTTTAGACAATTAGAAACGGTCTACGTTTACGCTAGCATGAAAAAC
GATCAGGATACAACTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGACCAATTAACTGACTGGCAGACCAATGAGCCAGCACTTAAAA
GTTATCAACATTTTATCCAGACTATCACTGATAGCCGCGAGCATGTCTTATCAGGTCAAGAAGAAGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCTGCTAGTCAAACCTTTAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTCGAAGCGCTCTATAGTACTTACGATCAATTCAAAAATACGTTTGCGACAACCCTTGCGACTGAAATCAAAGGG
CACAACTACCTCGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCGCCTAAGGCCATTCCCGAATCAGT
CTACACAACCTTAGTCGACCAAGTGAACCAACATCTGCCATTATTGCATCGTTATGTTAAATTACGCCAAAAGCAATTAG
CATTACCGCAATTGCATATGTATGACTTATACACACCACTTTTAGGCAAACCCGCTTTGAGCTACACTTATCCACAAGCG
CAAGCAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATACACCCCAATTGTGGACCAAATCTTCGATCAACGACA
AATTGATGTCGTTGAAAACAAAGGCAAGCGCAGTGGCGCTTACTCTGGCGGCGCATATGACACTAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACACACTGGTCCACGAAACCGGCCACAGTGTCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGCGATTATCCAATCTTCATCGCTGAAATTGCGTCCACAACGAATGAAAATCTCCTTAC
TGAATATCTTTTGAAGACCCAAAAGGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CCGTCTTCCGCCAAACACAATTTGCCGAATTCGAACATTATATTCACGATGCAGCAGCCAACGGAACCCCTCTAACGGCT
GATTTCATGTCAACTTACTACGCTGACTTAAACGCCCGCTACTATGGTGATGCCGTTGCCAAGGATCCTCAAATTGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGTTTTGCCGCTGCGACAACCC
TCGCTGATCAAATCAGTACGAACCAACCGGGTGCACTCGACAACTATCTGACCTACCTCAAAAACGGGAGTGCCAGTTAC
CCAATTGAAACGATGCAAAAAGCCGGTGTGGATATGACGAACGCCGATTATCTTGAACGCGCCTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.664

0.543