Detailed information NTG0934659

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: V4939_RS05950
• Genome accession: NZ_CP144733
• Coordinates: 1278172..1280382 (+)
• Length: 736 a.a.
• NCBI ID: WP_156483617.1
• Uniprot ID: -
• Organism: Azotobacter vinelandii DJ
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1273172..1285382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4939_RS05925 (V4939_05925)	-	1273326..1274048 (-)	723	WP_012700103.1	glycerophosphodiester phosphodiesterase	-
V4939_RS05930 (V4939_05930)	-	1274296..1275546 (+)	1251	WP_012700104.1	lipoprotein-releasing ABC transporter permease subunit	-
V4939_RS05935 (V4939_05935)	lolD	1275539..1276237 (+)	699	WP_012700105.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
V4939_RS05940 (V4939_05940)	-	1276240..1277484 (+)	1245	WP_012700106.1	lipoprotein-releasing ABC transporter permease subunit	-
V4939_RS05945 (V4939_05945)	-	1277509..1278036 (-)	528	WP_012700107.1	DUF2062 domain-containing protein	-
V4939_RS05950 (V4939_05950)	comA	1278172..1280382 (+)	2211	WP_156483617.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
V4939_RS05955 (V4939_05955)	-	1280454..1281086 (+)	633	WP_041807047.1	MotA/TolQ/ExbB proton channel family protein	-
V4939_RS05960 (V4939_05960)	-	1281083..1281511 (+)	429	WP_012700110.1	biopolymer transporter ExbD	-
V4939_RS05965 (V4939_05965)	lpxK	1281511..1282512 (+)	1002	WP_012700111.1	tetraacyldisaccharide 4'-kinase	-
V4939_RS05970 (V4939_05970)	-	1282573..1282758 (+)	186	WP_012700112.1	Trm112 family protein	-
V4939_RS05975 (V4939_05975)	kdsB	1282755..1283519 (+)	765	WP_012700113.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
V4939_RS05980 (V4939_05980)	-	1283519..1283983 (+)	465	WP_012700114.1	low molecular weight protein-tyrosine-phosphatase	-
V4939_RS05985 (V4939_05985)	murB	1283980..1284999 (+)	1020	WP_012700115.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79919.77 Da
• Isoelectric Point: 10.2397

>NTDB_id=934659 V4939_RS05950 WP_156483617.1 1278172..1280382(+) (comA) [Azotobacter vinelandii DJ]
MLALTAGLLVLRFLPALPPWWLWSPMALGAAILLAARRYSPALFLFGLGWACLSAHWALEERLPVELDGRTLWLEGLVVG
LPARIDGTLHFQLEEASSRRAELPGRLRLAWHAGPEVRAGERWRLAVSLKRPRGLVNPQGFDYEAWLLAQRIGATGTVKA
GERLGTPENADGWRDSLRQRLLQVDAHGREGALAALVMGDASGLSVADWKLLQDTGTVHLMVISGQHVGLLAGLVYGLVV
LLARFGLWPGFLPWLPCACGLAFATALGYGWLAGFGVPVQRACAMLAVVLFWRLRFRHLGLWLPILLALDGVLLLEPLAS
LQPGFWLSFGAVVILVLAFGGRLGAWSWRQTLWRAQWTSALGLLPLLLALGLPISLSGPLANLVAVPWVGFAVVPLALLG
TLLLPLPAMGEGLLWLAGALLETLFRLLGEIAGAVPAWLPHAVPVWGWLLALLGTLLILLPAGVPLRVPGLALLLPLAFP
PQERIPQARADVWLLDVGQGLAVLVRTRGHDLLYDAGPRFGDFDLGERVVLPSLRNLGVGRLDRLLLSHADGDHAGGALA
VRRALPVGEVVAGEAQAQSAALAAQPCARRAWQWDGVRFATWHWTAVQEGNRASCVLLVEAAGERLLLTGDIDAAAERAL
LDSHPEWRADWLLAPHHGSRSSSSPALLKALAPRAVLISRGWNNGFGHPHAQVVERYRKLPAVIHDTARQGALRFRLGDW
GRARGLREEPRFWREK

Nucleotide

• Length: 2211 bp

>NTDB_id=934659 V4939_RS05950 WP_156483617.1 1278172..1280382(+) (comA) [Azotobacter vinelandii DJ]
ATGTTGGCGCTCACCGCAGGTCTGCTCGTCCTGCGTTTCCTTCCGGCCCTACCGCCCTGGTGGCTGTGGTCGCCGATGGC
GCTGGGCGCTGCGATCCTTCTGGCGGCGCGTCGCTATTCGCCGGCGCTCTTTCTCTTCGGTCTCGGCTGGGCCTGCCTGT
CGGCGCACTGGGCGCTGGAGGAACGGTTGCCTGTCGAACTCGATGGTCGCACCCTGTGGCTGGAGGGGCTGGTGGTCGGT
CTGCCGGCGCGCATCGACGGCACGCTGCATTTCCAACTGGAGGAGGCCTCTTCCCGGCGCGCCGAACTGCCCGGGCGACT
GCGCCTAGCGTGGCACGCCGGGCCGGAGGTCCGCGCCGGGGAGCGCTGGCGCCTGGCGGTCAGCCTCAAGCGTCCGCGCG
GCCTGGTCAACCCGCAGGGTTTCGATTACGAGGCCTGGCTGCTGGCCCAGCGGATCGGCGCCACCGGGACGGTGAAAGCG
GGAGAGCGACTCGGAACGCCGGAAAACGCCGACGGTTGGCGCGATTCCCTGCGCCAGCGCCTGCTGCAGGTCGATGCCCA
TGGCCGTGAGGGCGCGCTCGCCGCGCTGGTGATGGGCGACGCGTCCGGGCTGAGCGTGGCGGACTGGAAGCTCCTGCAGG
ATACCGGCACCGTGCATCTGATGGTGATCTCCGGCCAGCATGTCGGCCTGCTTGCCGGCCTGGTCTACGGGCTGGTGGTC
CTGCTGGCGAGATTTGGCCTGTGGCCGGGTTTTCTGCCCTGGTTGCCCTGTGCCTGCGGCCTGGCCTTCGCCACCGCGCT
CGGTTATGGCTGGCTGGCCGGCTTCGGGGTACCAGTACAGCGGGCCTGCGCCATGCTCGCCGTGGTGCTGTTCTGGCGCC
TGCGTTTCCGCCACCTGGGTCTCTGGCTACCCATCCTGCTGGCGCTGGACGGCGTACTGCTGCTCGAGCCCCTGGCCAGC
CTGCAGCCGGGGTTCTGGCTGTCGTTCGGTGCGGTGGTGATCCTCGTCCTGGCCTTCGGCGGCCGGCTGGGTGCCTGGTC
GTGGCGGCAGACCCTGTGGCGAGCGCAGTGGACCAGTGCGCTGGGACTGCTACCGTTGTTGCTGGCCTTGGGCCTGCCGA
TCAGTCTCAGCGGTCCGTTGGCCAATCTGGTCGCGGTACCCTGGGTCGGTTTCGCGGTGGTCCCGCTGGCTCTGCTCGGA
ACCCTGCTGCTGCCCTTGCCGGCAATGGGCGAGGGCCTTCTCTGGCTGGCCGGCGCCTTGCTGGAGACGCTGTTTCGGCT
GCTCGGCGAGATCGCCGGCGCCGTACCGGCCTGGCTGCCCCACGCGGTGCCGGTCTGGGGCTGGCTGCTGGCGCTGCTCG
GGACCCTGCTGATCCTGCTGCCGGCGGGAGTGCCGCTGCGTGTCCCGGGACTGGCGCTGCTGCTGCCCCTGGCATTTCCG
CCGCAGGAGCGAATCCCGCAGGCACGGGCCGATGTCTGGCTGCTGGATGTCGGGCAGGGCCTTGCCGTGCTTGTGCGTAC
CCGCGGGCACGACCTGCTCTATGATGCTGGGCCGCGTTTCGGCGATTTCGATCTGGGCGAGCGCGTGGTCCTGCCTTCGC
TGCGCAATCTCGGCGTGGGCCGCCTGGATCGCCTGCTGCTCAGCCATGCCGATGGCGACCACGCCGGTGGCGCCCTGGCC
GTGCGGCGCGCTCTGCCGGTGGGCGAGGTCGTCGCCGGCGAGGCGCAGGCGCAATCGGCGGCGCTCGCCGCGCAGCCTTG
CGCCCGTCGCGCCTGGCAGTGGGATGGTGTGCGTTTCGCCACCTGGCACTGGACGGCCGTGCAAGAGGGCAATCGGGCTT
CCTGCGTGCTGCTGGTCGAGGCCGCCGGCGAGCGCCTGCTGCTGACCGGCGATATCGATGCCGCAGCCGAGCGGGCACTG
CTCGACAGCCACCCGGAGTGGCGCGCCGACTGGCTGCTGGCGCCTCACCACGGCAGCCGCAGTTCGTCTTCGCCGGCTCT
GCTCAAGGCCCTGGCGCCGCGCGCGGTGCTGATCTCGCGCGGCTGGAACAACGGCTTCGGCCATCCCCATGCGCAGGTCG
TGGAGCGTTACCGGAAGCTGCCGGCCGTGATTCACGATACTGCGCGCCAGGGGGCCCTGCGGTTTCGCCTGGGCGACTGG
GGCCGGGCGCGCGGGCTGCGCGAAGAGCCCCGCTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-461)

• Domain of unknown function (DUF4131) (DUF4131) (18-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	65.912	96.06	0.633
comA	Ralstonia pseudosolanacearum GMI1000	34.814	100	0.394