Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8614_RS05520 Genome accession   NZ_AP028361
Coordinates   1061519..1062070 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10605     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1056519..1067070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8614_RS05485 (B10605_10750) - 1056780..1057205 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  R8614_RS05490 - 1057269..1057818 (+) 550 Protein_1061 nitroreductase family protein -
  R8614_RS05495 (B10605_10780) - 1057818..1058423 (+) 606 WP_052790983.1 NAD(P)H-dependent oxidoreductase -
  R8614_RS05500 (B10605_10790) pgsA 1058548..1059084 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8614_RS05505 (B10605_10800) rseP 1059081..1060187 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  R8614_RS05510 (B10605_10810) - 1060180..1061046 (+) 867 WP_002886367.1 VirK family antimicrobial peptide resistance protein -
  R8614_RS05515 (B10605_10820) rpsF 1061133..1061510 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8614_RS05520 (B10605_10830) ssb 1061519..1062070 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  R8614_RS05525 (B10605_10840) rpsR 1062081..1062341 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8614_RS05530 (B10605_10850) lon 1062401..1064776 (-) 2376 WP_002852988.1 endopeptidase La -
  R8614_RS05535 (B10605_10860) - 1064793..1065440 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8614_RS05540 (B10605_10870) fliW 1065601..1065990 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8614_RS05545 (B10605_10880) proC 1065990..1066724 (+) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  R8614_RS05550 (B10605_10890) ctsT 1066721..1067023 (+) 303 WP_032582988.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=93449 R8614_RS05520 WP_002853013.1 1061519..1062070(+) (ssb) [Campylobacter jejuni strain BCH-10605]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=93449 R8614_RS05520 WP_002853013.1 1061519..1062070(+) (ssb) [Campylobacter jejuni strain BCH-10605]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment