Detailed information NTG0934423

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: V4943_RS05210
• Genome accession: NZ_CP144685
• Coordinates: 996001..998274 (+)
• Length: 757 a.a.
• NCBI ID: WP_011173436.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain HB27_delta_csm3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 991001..1003274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4943_RS05180 (V4943_05180)	-	991124..991615 (+)	492	WP_011173430.1	DUF5317 domain-containing protein	-
V4943_RS05185 (V4943_05185)	-	991670..992674 (+)	1005	WP_011173431.1	homoisocitrate dehydrogenase	-
V4943_RS05190 (V4943_05190)	pilM	992809..993942 (+)	1134	WP_011173432.1	type IV pilus assembly protein PilM	Machinery gene
V4943_RS05195 (V4943_05195)	pilN	993935..994558 (+)	624	WP_011173433.1	competence protein	Machinery gene
V4943_RS05200 (V4943_05200)	pilO	994548..995129 (+)	582	WP_011173434.1	type 4a pilus biogenesis protein PilO	Machinery gene
V4943_RS05205 (V4943_05205)	pilW	995126..996004 (+)	879	WP_011173435.1	hypothetical protein	Machinery gene
V4943_RS05210 (V4943_05210)	pilQ	996001..998274 (+)	2274	WP_011173436.1	secretin N-terminal domain-containing protein	Machinery gene
V4943_RS05215 (V4943_05215)	aroC	998333..999484 (+)	1152	WP_011173437.1	chorismate synthase	-
V4943_RS05220 (V4943_05220)	-	999509..1000063 (+)	555	WP_011173438.1	shikimate kinase	-
V4943_RS05225 (V4943_05225)	-	1000041..1001087 (+)	1047	WP_011173439.1	3-dehydroquinate synthase family protein	-
V4943_RS05230 (V4943_05230)	rsmF	1001133..1002503 (-)	1371	WP_041443492.1	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
V4943_RS05235 (V4943_05235)	-	1002556..1002933 (+)	378	WP_011173441.1	4'-phosphopantetheinyl transferase superfamily protein	-
V4943_RS05240 (V4943_05240)	-	1002911..1003264 (-)	354	WP_011173442.1	DUF4870 domain-containing protein	-

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 82637.62 Da
• Isoelectric Point: 5.1292

>NTDB_id=934423 V4943_RS05210 WP_011173436.1 996001..998274(+) (pilQ) [Thermus thermophilus strain HB27_delta_csm3]
MKSAWIRAAVIALAGLGAFALAGSFPEEPRFQAPVNLKVSESQVKAGQTLPLDVVLEALARSVGLQPLIYRAYDPSGDPA
TAQPPLPNVKLDFQGKPFREVWDLLFATYGNQYSLDYLFLPPDVVVVAPTQVITALVDAPSRTGAMERRPYIVGVPEIAY
KRTETDAQGQPRTVVNIEGAKAWVQNDLLPFLSREAAGLNVNWIVVEEGGRLKAVLSVLATPEQHARFSDILQRAGIDFR
PLPALAQPKPRVEKTYTLTYATFPDLLAFLQSRLPEAQIGVVPTNPQRAIVLATEEDHARLSELLKTADVPKTVRRVYTL
QNLTFAEAQERLKPLLEKDLKGARLESLPGNPKALLLEAPEAEHALFAEILKALDVPPQAPQAPQEATLRRLYPLHYANA
EQVAPFLAREVPGIVVQTVPGQPLLSVRGTEAQLREVESLLAQIDRPPEQGPPVFQRAYQLSNAKAVELAQVLQEALKAR
QAQNQGQQNQAPPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVPQVNLRVRIQEVQSNLTRSLGLKWNSIAG
GNVAASILDSGLSLIFDSTRSLAALNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERVPFD
VGLIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGLTSQESNQSQQGVPLLMD
IPLIGELFKQRTNESTDKELLVVITADILKEAASANP

Nucleotide

• Length: 2274 bp

>NTDB_id=934423 V4943_RS05210 WP_011173436.1 996001..998274(+) (pilQ) [Thermus thermophilus strain HB27_delta_csm3]
ATGAAGAGCGCGTGGATCCGTGCGGCCGTGATCGCCCTCGCAGGGCTAGGGGCTTTTGCCCTTGCGGGGAGCTTTCCCGA
GGAGCCCCGCTTCCAGGCCCCGGTGAACCTCAAGGTCTCGGAATCCCAGGTCAAGGCGGGCCAGACCCTGCCCTTGGACG
TGGTCCTCGAGGCCCTGGCGCGAAGCGTGGGGCTCCAGCCCCTCATCTACCGGGCCTACGACCCGAGCGGGGACCCCGCC
ACGGCCCAGCCCCCCCTGCCCAACGTCAAGCTGGACTTCCAGGGCAAGCCCTTCCGGGAGGTCTGGGACCTCCTCTTCGC
CACCTACGGCAACCAGTACAGCCTGGACTACCTCTTCCTGCCCCCCGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCA
CCGCCCTGGTGGACGCCCCGAGCCGCACGGGGGCCATGGAGCGCAGGCCCTACATCGTGGGCGTCCCCGAGATCGCCTAC
AAGCGCACGGAGACGGACGCCCAGGGCCAGCCCCGCACGGTCGTCAACATCGAGGGCGCCAAGGCCTGGGTCCAGAACGA
TCTCCTCCCCTTCCTCTCCCGGGAGGCGGCGGGGCTCAACGTGAACTGGATCGTGGTGGAGGAAGGGGGTAGGCTCAAGG
CCGTCCTCTCCGTCCTCGCCACCCCCGAGCAGCACGCCCGCTTCTCCGATATCCTGCAGCGGGCCGGGATTGACTTCCGC
CCCCTCCCCGCCCTGGCCCAGCCTAAGCCCCGGGTGGAGAAGACCTACACCCTCACCTACGCCACCTTCCCCGACCTCCT
CGCCTTCCTCCAGTCCCGTCTCCCCGAGGCCCAGATCGGCGTGGTCCCCACCAACCCCCAAAGGGCCATCGTCCTCGCCA
CCGAGGAGGACCACGCCCGCTTGAGCGAGCTTCTGAAGACGGCCGACGTCCCCAAGACCGTCCGCCGGGTCTACACCCTG
CAGAACCTCACCTTCGCCGAGGCCCAGGAGCGCCTAAAGCCCCTCCTGGAGAAGGACCTCAAGGGGGCCCGCCTGGAAAG
CCTCCCCGGCAACCCCAAGGCCCTCCTCCTCGAGGCCCCCGAGGCTGAGCACGCCCTCTTCGCCGAGATCCTGAAGGCCC
TGGACGTCCCCCCCCAGGCCCCCCAAGCCCCCCAGGAGGCCACCTTGCGGCGCCTCTACCCCCTGCACTACGCCAACGCC
GAGCAGGTGGCCCCCTTCCTCGCCCGGGAGGTGCCGGGGATCGTGGTCCAGACCGTCCCCGGCCAACCCCTCCTCTCGGT
GAGGGGCACGGAAGCGCAGCTTAGGGAGGTGGAAAGCCTCCTCGCCCAGATTGACCGCCCCCCGGAGCAGGGCCCTCCCG
TGTTCCAGCGGGCCTACCAGCTCTCCAACGCCAAGGCGGTGGAGCTCGCCCAGGTGCTCCAGGAGGCGCTCAAGGCCCGG
CAGGCCCAGAACCAGGGCCAGCAGAACCAGGCCCCCCCCACCCGGGAGGCCACGGTGGTGGCCGACCCCAGGACCAACAC
CCTCATCGTCACCGGCACCCAGGAGGACCTCGCCCTGGTGGAGGGCCTCATCCCCAAGCTGGACCAGCCCGTGCCCCAGG
TGAACCTCAGGGTGCGCATCCAGGAGGTCCAGTCCAACCTGACCCGCAGCCTCGGCCTCAAGTGGAACAGCATCGCCGGC
GGCAACGTGGCGGCCAGCATCCTGGACTCGGGCCTTTCCCTCATCTTTGACTCCACGCGAAGCCTCGCCGCCCTCAACAT
CATGGCCACCCTGGACGCCCTGCAGCAACAGGGCCTCTCCCGGGCCCTCCGGGACGTGAACCAGACCGTCCTCAACAACC
AAACCGCCCGCCTGCAGTCCGGCGAGACCTTCTTCATCCGGCGGGTGGTGAACGACCAGGTGGAACGGGTCCCCTTTGAC
GTGGGGCTCATCGTGGAGGTCACGCCCCAGATCACCGCCGACGGCCAGATCCTCCTCAACATCAAGGCCGAGGTCTCGGG
GAACGTGCAGCGCAACCCCGTGGACGGGGACGTGGACCGCTTCACCAAGCAGGTGGTGACCACCACCCTCAGGGTCAAAG
ACGGGGAGACCGTGGTCCTCGGGGGCCTCACCTCCCAGGAGTCCAACCAGAGCCAGCAGGGGGTGCCCCTCCTCATGGAC
ATCCCCCTGATCGGCGAGCTCTTCAAGCAGCGGACGAACGAGAGCACCGACAAGGAGCTTTTGGTGGTGATCACCGCCGA
CATCCTCAAGGAGGCGGCCTCGGCGAACCCCTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (593-750)

• Bacterial type II/III secretion system short domain (Secretin_N) (391-450)

• Bacterial type II/III secretion system short domain (Secretin_N) (457-533)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Thermus thermophilus HB27	100	100	1