Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   V4943_RS05195 Genome accession   NZ_CP144685
Coordinates   993935..994558 (+) Length   207 a.a.
NCBI ID   WP_011173433.1    Uniprot ID   Q72IW7
Organism   Thermus thermophilus strain HB27_delta_csm3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 988935..999558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4943_RS05170 (V4943_05170) - 989591..989875 (-) 285 WP_226980268.1 hypothetical protein -
  V4943_RS05175 (V4943_05175) - 989757..991073 (+) 1317 WP_338457458.1 HD domain-containing phosphohydrolase -
  V4943_RS05180 (V4943_05180) - 991124..991615 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  V4943_RS05185 (V4943_05185) - 991670..992674 (+) 1005 WP_011173431.1 homoisocitrate dehydrogenase -
  V4943_RS05190 (V4943_05190) pilM 992809..993942 (+) 1134 WP_011173432.1 type IV pilus assembly protein PilM Machinery gene
  V4943_RS05195 (V4943_05195) pilN 993935..994558 (+) 624 WP_011173433.1 competence protein Machinery gene
  V4943_RS05200 (V4943_05200) pilO 994548..995129 (+) 582 WP_011173434.1 type 4a pilus biogenesis protein PilO Machinery gene
  V4943_RS05205 (V4943_05205) pilW 995126..996004 (+) 879 WP_011173435.1 hypothetical protein Machinery gene
  V4943_RS05210 (V4943_05210) pilQ 996001..998274 (+) 2274 WP_011173436.1 secretin N-terminal domain-containing protein Machinery gene
  V4943_RS05215 (V4943_05215) aroC 998333..999484 (+) 1152 WP_011173437.1 chorismate synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23035.51 Da        Isoelectric Point: 9.7530

>NTDB_id=934420 V4943_RS05195 WP_011173433.1 993935..994558(+) (pilN) [Thermus thermophilus strain HB27_delta_csm3]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGATGGESGAR

Nucleotide


Download         Length: 624 bp        

>NTDB_id=934420 V4943_RS05195 WP_011173433.1 993935..994558(+) (pilN) [Thermus thermophilus strain HB27_delta_csm3]
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTTTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGCAACGGGGGGTGAAAGCGGTGCTCGCTAG

Domains

Predicted by InterproScan.

PilN biogenesis protein dimerization domain (PilN_bio_d)

(97-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2YCH

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Thermus thermophilus HB27

100

100

1