Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   V4Q78_RS01565 Genome accession   NZ_CP144563
Coordinates   336281..336754 (+) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain AB5075 isolate grey variant     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331281..341754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q78_RS01540 (V4Q78_01540) - 331744..333849 (-) 2106 WP_001117590.1 HD domain-containing protein -
  V4Q78_RS01545 (V4Q78_01545) - 333889..334019 (-) 131 Protein_295 hypothetical protein -
  V4Q78_RS01550 (V4Q78_01550) rpoZ 334058..334336 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  V4Q78_RS01555 (V4Q78_01555) gmk 334409..335038 (-) 630 WP_000015937.1 guanylate kinase -
  V4Q78_RS01560 (V4Q78_01560) ispH 335161..336111 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V4Q78_RS01565 (V4Q78_01565) fimU 336281..336754 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  V4Q78_RS01570 (V4Q78_01570) pilV 336748..337308 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  V4Q78_RS01575 (V4Q78_01575) pilW 337309..338310 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  V4Q78_RS01580 (V4Q78_01580) pilX 338307..339125 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=934288 V4Q78_RS01565 WP_001214060.1 336281..336754(+) (fimU) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=934288 V4Q78_RS01565 WP_001214060.1 336281..336754(+) (fimU) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987