Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   V4Q78_RS01580 Genome accession   NZ_CP144563
Coordinates   338307..339125 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB5075 isolate grey variant     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333307..344125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q78_RS01545 (V4Q78_01545) - 333889..334019 (-) 131 Protein_295 hypothetical protein -
  V4Q78_RS01550 (V4Q78_01550) rpoZ 334058..334336 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  V4Q78_RS01555 (V4Q78_01555) gmk 334409..335038 (-) 630 WP_000015937.1 guanylate kinase -
  V4Q78_RS01560 (V4Q78_01560) ispH 335161..336111 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V4Q78_RS01565 (V4Q78_01565) fimU 336281..336754 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  V4Q78_RS01570 (V4Q78_01570) pilV 336748..337308 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  V4Q78_RS01575 (V4Q78_01575) pilW 337309..338310 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  V4Q78_RS01580 (V4Q78_01580) pilX 338307..339125 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V4Q78_RS01585 (V4Q78_01585) pilY1 339137..342991 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  V4Q78_RS01590 (V4Q78_01590) pilY2 343002..343484 (+) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V4Q78_RS01595 (V4Q78_01595) pilE 343481..343906 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=934291 V4Q78_RS01580 WP_000149374.1 338307..339125(+) (pilX) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=934291 V4Q78_RS01580 WP_000149374.1 338307..339125(+) (pilX) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993