Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8607_RS05535 Genome accession   NZ_AP028360
Coordinates   1056284..1056835 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10579     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1051284..1061835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8607_RS05500 (B10579_10740) - 1051545..1051970 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  R8607_RS05505 - 1052034..1052583 (+) 550 Protein_1058 nitroreductase family protein -
  R8607_RS05510 (B10579_10770) - 1052583..1053188 (+) 606 WP_052790983.1 NAD(P)H-dependent oxidoreductase -
  R8607_RS05515 (B10579_10780) pgsA 1053313..1053849 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8607_RS05520 (B10579_10790) rseP 1053846..1054952 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  R8607_RS05525 (B10579_10800) - 1054945..1055811 (+) 867 WP_002886367.1 VirK family antimicrobial peptide resistance protein -
  R8607_RS05530 (B10579_10810) rpsF 1055898..1056275 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8607_RS05535 (B10579_10820) ssb 1056284..1056835 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  R8607_RS05540 (B10579_10830) rpsR 1056846..1057106 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8607_RS05545 (B10579_10840) lon 1057166..1059541 (-) 2376 WP_002852988.1 endopeptidase La -
  R8607_RS05550 (B10579_10850) - 1059558..1060205 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8607_RS05555 (B10579_10860) fliW 1060366..1060755 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8607_RS05560 (B10579_10870) proC 1060755..1061489 (+) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  R8607_RS05565 (B10579_10880) ctsT 1061486..1061788 (+) 303 WP_032582988.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=93404 R8607_RS05535 WP_002853013.1 1056284..1056835(+) (ssb) [Campylobacter jejuni strain BCH-10579]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=93404 R8607_RS05535 WP_002853013.1 1056284..1056835(+) (ssb) [Campylobacter jejuni strain BCH-10579]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment