Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NUH87_RS25415 Genome accession   NZ_CP144470
Coordinates   5557277..5559493 (+) Length   738 a.a.
NCBI ID   WP_338523140.1    Uniprot ID   -
Organism   Pseudomonas batumici strain Koz11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5552277..5564493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH87_RS25395 (NUH87_25395) - 5554147..5554770 (+) 624 WP_338523139.1 glutathione S-transferase -
  NUH87_RS25400 (NUH87_25400) - 5554904..5555836 (+) 933 WP_040065427.1 ABC transporter ATP-binding protein -
  NUH87_RS25405 (NUH87_25405) - 5555833..5556612 (+) 780 WP_040065426.1 ABC transporter permease -
  NUH87_RS25410 (NUH87_25410) - 5556619..5557140 (-) 522 WP_040065425.1 DUF2062 domain-containing protein -
  NUH87_RS25415 (NUH87_25415) comA 5557277..5559493 (+) 2217 WP_338523140.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NUH87_RS25420 (NUH87_25420) - 5559610..5560244 (+) 635 Protein_4999 MotA/TolQ/ExbB proton channel family protein -
  NUH87_RS25425 (NUH87_25425) - 5560241..5560669 (+) 429 WP_040065422.1 biopolymer transporter ExbD -
  NUH87_RS25430 (NUH87_25430) lpxK 5560669..5561679 (+) 1011 WP_338523141.1 tetraacyldisaccharide 4'-kinase -
  NUH87_RS25435 (NUH87_25435) - 5561705..5561890 (+) 186 WP_007931663.1 Trm112 family protein -
  NUH87_RS25440 (NUH87_25440) kdsB 5561887..5562651 (+) 765 WP_040065420.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NUH87_RS25445 (NUH87_25445) - 5562651..5563115 (+) 465 WP_338523142.1 low molecular weight protein-tyrosine-phosphatase -
  NUH87_RS25450 (NUH87_25450) murB 5563112..5564131 (+) 1020 WP_338523143.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80630.40 Da        Isoelectric Point: 10.7149

>NTDB_id=934005 NUH87_RS25415 WP_338523140.1 5557277..5559493(+) (comA) [Pseudomonas batumici strain Koz11]
MRTGMLALAAGLLALRFLPQLPPGGLLVLLSVIGLMLLPFRTYPLALFLFGFSWACFQAQRALDDRLAPALDGQTLWVEG
RVVGLPQRDEQGVRFELEDATSRRARLPTRLRLSWFGGPDLRSGERWRLAVQLKRGQGLLNPAGFDYQAWLLARGIGGVG
SIKDGQLLASASGGWRDTIRRRLLQVDAQGQSATLLALVLGDGSGLSAQTWRVLQDTGTLHLLVISGQHIGLFAGLIYAL
IAGLARYGLWPGRWPWLPWACGLAFAAALGYALLAGFGVPVRRACVMLAMVLLWRWRYRHLGAVVPLLAAVNLVLLFDPL
VSLQTGFWLSFAAVAVLIFTFSGRLGAWSLWQSWTRAQWVIALGLFPALLLLGLPVSLSAPLANWVAVPWISLLVLPLAL
LGTFLLPLPWLGEGLLWLAGGLLGGLFQWLGWLAAQVPAWVPAVVPLWAWALSSLGILLLLLPAGMPLRPLGWPLAALAL
FAPSAQVAQGEAEVWQLDVGQGLAILVRTRQHSLLYDAGPRVGEFDQGERVVLPSLHKLGVRRLDRLLLSHADADHAGGA
LAVRRGLPVSEVLGGDVEGLSPALQARPCVSGQRWEWDGVRFALWRWPQARDSNQSSCVLQIEANGERLLLTGDIDVEAE
RAFLDSPLAVASDWLQSPHHGSRSSSSMVFLQRLAPRGVLISRGRGNAFGHPHPQVMARYKALDMAIYDSAEQGALRLLL
GRFDEPRSLQAERRFWRQ

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=934005 NUH87_RS25415 WP_338523140.1 5557277..5559493(+) (comA) [Pseudomonas batumici strain Koz11]
ATGCGCACAGGGATGTTGGCGCTGGCGGCGGGGCTTCTGGCCTTGCGTTTCCTGCCGCAACTGCCGCCCGGCGGACTGTT
GGTGCTGCTGTCGGTGATCGGCTTGATGCTGTTGCCGTTTCGCACCTATCCGCTGGCGTTGTTTCTGTTCGGCTTCAGTT
GGGCCTGTTTTCAGGCGCAACGGGCGCTGGACGATCGGCTGGCGCCGGCGCTGGATGGCCAGACGCTGTGGGTTGAAGGC
CGGGTGGTCGGTTTGCCGCAACGTGACGAACAGGGGGTGCGCTTCGAACTGGAGGACGCGACTTCGCGTCGGGCGCGGCT
GCCGACGCGCTTGCGGCTGTCCTGGTTCGGCGGGCCGGATCTGCGCAGCGGCGAGCGCTGGCGCCTGGCGGTCCAGCTCA
AGCGCGGGCAGGGTTTGCTCAATCCCGCCGGTTTCGATTACCAGGCCTGGCTGCTCGCCCGGGGTATCGGCGGCGTCGGC
TCGATCAAGGACGGGCAGTTACTGGCGTCGGCCAGCGGCGGTTGGCGCGATACGATCCGGCGACGCTTGCTGCAAGTCGA
TGCCCAAGGGCAATCGGCCACCTTGCTGGCGCTGGTGCTCGGTGACGGTTCGGGGCTGTCGGCGCAGACCTGGCGGGTGC
TGCAGGACACCGGCACCCTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGGCTGTTCGCGGGGCTTATCTACGCGCTG
ATCGCCGGGTTGGCGCGTTATGGCCTGTGGCCGGGCCGCTGGCCCTGGTTGCCCTGGGCTTGCGGCCTGGCCTTTGCGGC
GGCGCTGGGGTACGCGCTGCTGGCCGGTTTCGGTGTACCGGTGCGCCGGGCCTGCGTGATGCTCGCCATGGTGCTGCTGT
GGCGTTGGCGTTATCGCCACCTGGGGGCGGTCGTGCCGCTGTTGGCGGCCGTGAACCTGGTGCTGCTGTTCGACCCGTTG
GTGAGTCTGCAAACAGGATTCTGGTTGTCCTTTGCCGCGGTTGCAGTGCTGATCTTCACGTTCAGCGGTCGACTGGGCGC
CTGGAGCCTCTGGCAGAGCTGGACCCGTGCACAATGGGTGATTGCCCTCGGACTCTTCCCCGCGCTGCTGTTGCTGGGCC
TGCCCGTCAGTCTCAGTGCACCGCTGGCCAACTGGGTCGCCGTGCCCTGGATCAGCCTGCTGGTATTGCCCTTGGCCTTG
CTGGGAACCTTCCTGTTGCCGTTGCCCTGGCTGGGAGAGGGGCTGCTGTGGTTGGCCGGCGGCCTGCTGGGTGGGTTGTT
TCAATGGCTCGGATGGCTGGCGGCGCAAGTGCCGGCCTGGGTCCCGGCGGTCGTTCCTTTATGGGCCTGGGCACTGAGCA
GCCTGGGTATTCTGCTGCTGTTGCTGCCCGCCGGCATGCCCCTGCGACCTTTGGGCTGGCCGCTGGCGGCGCTGGCGCTG
TTTGCGCCCTCGGCGCAGGTGGCCCAGGGTGAAGCCGAGGTCTGGCAGCTGGATGTCGGCCAGGGCCTGGCGATCCTCGT
CCGCACCCGCCAGCACAGCCTGTTGTACGACGCCGGGCCGCGGGTCGGCGAGTTCGACCAGGGCGAACGGGTGGTGCTGC
CGTCCTTGCACAAGCTGGGTGTGCGCCGACTCGACAGGCTGCTGCTCAGCCATGCCGATGCCGATCACGCCGGCGGGGCC
CTGGCCGTGCGGCGTGGCCTGCCGGTGAGCGAGGTGCTCGGCGGTGATGTCGAGGGTTTGTCCCCGGCGTTGCAGGCCCG
GCCCTGTGTCAGCGGCCAGCGCTGGGAGTGGGATGGCGTGCGCTTTGCACTGTGGCGCTGGCCCCAGGCCCGGGACAGCA
ATCAATCCTCCTGCGTCTTGCAGATCGAGGCCAATGGCGAGCGTCTGCTGCTGACCGGCGATATCGATGTCGAGGCCGAG
CGGGCCTTTCTCGACAGTCCGCTGGCGGTTGCCAGCGATTGGCTGCAGTCACCCCATCACGGAAGCCGCAGTTCATCGTC
CATGGTTTTCCTGCAACGCCTGGCCCCGCGTGGCGTGCTGATTTCCCGTGGGCGGGGCAACGCTTTCGGTCATCCCCACC
CGCAAGTCATGGCCCGTTACAAAGCCCTGGACATGGCGATCTACGACAGCGCGGAGCAGGGCGCGCTGCGCTTGCTGCTG
GGGCGTTTCGACGAACCGCGGTCCCTGCAGGCCGAGCGGCGTTTCTGGCGGCAATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.726

97.425

0.611
  comA Ralstonia pseudosolanacearum GMI1000

36.605

100

0.374