Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V4D31_RS06665 Genome accession   NZ_CP144374
Coordinates   1305593..1305958 (+) Length   121 a.a.
NCBI ID   WP_353685673.1    Uniprot ID   A0AAU8H3G2
Organism   Thermodesulfovibrio sp. 3462-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300593..1310958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4D31_RS06640 (V4D31_06610) accB 1300702..1301148 (+) 447 WP_353685668.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  V4D31_RS06645 (V4D31_06615) accC 1301148..1302503 (+) 1356 WP_353685669.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  V4D31_RS06650 (V4D31_06620) - 1302657..1303211 (+) 555 WP_353685670.1 hypothetical protein -
  V4D31_RS06655 (V4D31_06625) - 1303208..1304338 (+) 1131 WP_353685671.1 cache domain-containing protein -
  V4D31_RS06660 (V4D31_06630) - 1304350..1305561 (+) 1212 WP_353685672.1 response regulator -
  V4D31_RS06665 (V4D31_06635) pilH 1305593..1305958 (+) 366 WP_353685673.1 response regulator Machinery gene
  V4D31_RS06670 (V4D31_06640) - 1305943..1306392 (+) 450 WP_353685674.1 chemotaxis protein CheW -
  V4D31_RS06675 (V4D31_06645) - 1306408..1308648 (+) 2241 WP_353685675.1 response regulator -
  V4D31_RS06680 (V4D31_06650) - 1308645..1310069 (-) 1425 WP_353685676.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13816.16 Da        Isoelectric Point: 5.0816

>NTDB_id=933878 V4D31_RS06665 WP_353685673.1 1305593..1305958(+) (pilH) [Thermodesulfovibrio sp. 3462-1]
MTKVLVAEDSVTDAKYIESILKEGGYELFFAKDGEEAEELIKKETFDLVILDVVMPKKNGFQICREIKKNEKTKDIPVIL
VTSKKEEADKFWGKTQGADEYITKPFEPIDLLVAIKKCLKK

Nucleotide


Download         Length: 366 bp        

>NTDB_id=933878 V4D31_RS06665 WP_353685673.1 1305593..1305958(+) (pilH) [Thermodesulfovibrio sp. 3462-1]
ATGACTAAAGTTCTTGTTGCAGAAGATTCAGTTACAGATGCAAAATATATTGAGTCCATTCTTAAAGAAGGTGGATACGA
GCTTTTTTTTGCAAAAGATGGTGAAGAAGCTGAAGAATTGATAAAAAAAGAAACTTTTGATCTTGTTATTTTAGATGTGG
TTATGCCTAAAAAAAATGGCTTTCAAATTTGTAGAGAGATAAAGAAAAATGAAAAAACTAAAGATATACCTGTAATTCTT
GTAACTTCTAAAAAAGAAGAAGCTGATAAATTCTGGGGCAAGACGCAAGGAGCAGATGAATACATTACAAAACCTTTTGA
ACCAATTGATCTTTTGGTGGCTATAAAGAAATGTCTGAAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

48.76

100

0.488
  pilG Acinetobacter baumannii strain A118

40

95.041

0.38