Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   V3829_RS18500 Genome accession   NZ_CP144358
Coordinates   3737063..3737461 (+) Length   132 a.a.
NCBI ID   WP_043866822.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJ4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3732063..3742461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS18480 - 3734462..3734824 (-) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -
  V3829_RS18485 hxlA 3735056..3735691 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  V3829_RS18490 hxlB 3735688..3736245 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  V3829_RS18495 nucA/comI 3736604..3737041 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V3829_RS18500 nin/comJ 3737063..3737461 (+) 399 WP_043866822.1 competence protein ComJ Regulator
  V3829_RS18505 - 3737502..3737720 (-) 219 Protein_3589 family 1 glycosylhydrolase -
  V3829_RS20260 - 3737752..3737997 (-) 246 WP_109567708.1 family 1 glycosylhydrolase -
  V3829_RS18510 - 3737939..3738214 (-) 276 WP_369719109.1 YckD family protein -
  V3829_RS18515 - 3738331..3738765 (-) 435 WP_021494203.1 RDD family protein -
  V3829_RS18520 - 3738780..3739916 (-) 1137 WP_048368274.1 zinc-dependent alcohol dehydrogenase -
  V3829_RS18525 - 3739981..3741183 (-) 1203 WP_331828023.1 GTP-binding protein -
  V3829_RS18530 - 3741336..3741461 (+) 126 Protein_3595 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15014.99 Da        Isoelectric Point: 4.6564

>NTDB_id=933759 V3829_RS18500 WP_043866822.1 3737063..3737461(+) (nin/comJ) [Bacillus velezensis strain DJ4]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=933759 V3829_RS18500 WP_043866822.1 3737063..3737461(+) (nin/comJ) [Bacillus velezensis strain DJ4]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.744

97.727

0.75