Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V3829_RS06320 Genome accession   NZ_CP144358
Coordinates   1240086..1241471 (-) Length   461 a.a.
NCBI ID   WP_046560106.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJ4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235086..1246471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS06285 flgL 1235260..1236177 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  V3829_RS06290 flgK 1236189..1237706 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  V3829_RS06295 - 1237722..1238204 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V3829_RS06300 flgM 1238219..1238485 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V3829_RS06305 - 1238555..1238974 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  V3829_RS06310 comFC 1239049..1239738 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  V3829_RS06315 - 1239744..1240028 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  V3829_RS06320 comFA 1240086..1241471 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  V3829_RS06325 - 1241579..1242427 (-) 849 WP_044052857.1 DegV family protein -
  V3829_RS06330 degU 1242525..1243214 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V3829_RS06335 degS 1243291..1244454 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  V3829_RS06340 - 1244676..1245323 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.10 Da        Isoelectric Point: 10.1601

>NTDB_id=933718 V3829_RS06320 WP_046560106.1 1240086..1241471(-) (comFA) [Bacillus velezensis strain DJ4]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNCYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=933718 V3829_RS06320 WP_046560106.1 1240086..1241471(-) (comFA) [Bacillus velezensis strain DJ4]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACTGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631