Detailed information NTG0933674

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: V2H88_RS04160
• Genome accession: NZ_CP144351
• Coordinates: 893531..894634 (-)
• Length: 367 a.a.
• NCBI ID: WP_004918085.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RA-3M
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 888531..899634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2H88_RS04130 (V2H88_04130)	-	889498..889638 (+)	141	WP_015345427.1	hypothetical protein	-
V2H88_RS04135 (V2H88_04135)	comF	889726..890379 (-)	654	WP_004918078.1	ComF family protein	Machinery gene
V2H88_RS04145 (V2H88_04145)	-	890601..891152 (-)	552	WP_004918080.1	hypothetical protein	-
V2H88_RS04150 (V2H88_04150)	-	891207..891857 (-)	651	WP_004918082.1	HD domain-containing protein	-
V2H88_RS04155 (V2H88_04155)	gdhA	891989..893347 (-)	1359	WP_014938006.1	NADP-specific glutamate dehydrogenase	-
V2H88_RS04160 (V2H88_04160)	dprA	893531..894634 (-)	1104	WP_004918085.1	DNA-processing protein DprA	Machinery gene
V2H88_RS04165 (V2H88_04165)	-	894637..895014 (-)	378	WP_004918086.1	group III truncated hemoglobin	-
V2H88_RS04170 (V2H88_04170)	ruvC	895025..895579 (-)	555	WP_004918088.1	crossover junction endodeoxyribonuclease RuvC	-
V2H88_RS04175 (V2H88_04175)	-	895603..896793 (-)	1191	WP_065189192.1	carboxypeptidase-like regulatory domain-containing protein	-
V2H88_RS04180 (V2H88_04180)	-	896823..897296 (-)	474	WP_004918092.1	Lrp/AsnC family transcriptional regulator	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 40491.51 Da
• Isoelectric Point: 6.6968

>NTDB_id=933674 V2H88_RS04160 WP_004918085.1 893531..894634(-) (dprA) [Riemerella anatipestifer strain RA-3M]
MVNAEEILYSIALRRSPLVGDVIFASLVSEVGSAKEAWGLSKLELRKISGVGKQIASNIGDKNLLKFAEKEIEFCIKNEI
KIHLRHLNQLPRLLGECYDAPAILFQKGDYEDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIIYPSKHKILAEEILNNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPVQEPVYDI
IKEVNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRRYSII

Nucleotide

• Length: 1104 bp

>NTDB_id=933674 V2H88_RS04160 WP_004918085.1 893531..894634(-) (dprA) [Riemerella anatipestifer strain RA-3M]
ATGGTAAATGCGGAAGAAATTTTATATTCTATTGCTCTTCGGCGAAGCCCATTGGTGGGAGATGTTATATTTGCAAGTTT
GGTTAGCGAGGTAGGCTCTGCTAAGGAAGCGTGGGGTCTGTCTAAGTTGGAATTACGGAAAATATCAGGCGTAGGTAAGC
AAATTGCCTCAAACATCGGAGATAAAAATCTTTTAAAATTTGCTGAAAAGGAAATAGAGTTCTGCATTAAAAACGAAATA
AAAATCCACTTACGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCTGCTATTCTTTTTCAAAA
AGGAGATTATGAGGATACCGCTAATAATATTAGTATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGAATAGCTCAT
CAAGAGGCTTTAAAAAACAATATAAAAACTTCAGCGGTTTTAGCACACGGTTTACATATCATTTATCCGTCCAAACATAA
AATTCTCGCTGAAGAAATATTAAATAATGGTGGAGCTTTGTTTTCTGAATTCTGCTCTGATGAAAAGCCAGATAGAGAAC
ATTTTTTGCAAAGAAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCAGGAGGCTCT
ATTAGCACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTTTGGCAGGGCGTCTTACAGATAAATATAGCCA
AGGTTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCAGTTGAAGTTTCTTTAACTCCTGTTCAGGAGCCTGTTTATGATATT
ATTAAGGAGGTTAATGATATTTCATTAGATGACTTGTCAGAAAAATTAAATCAACCCATATCTAAAGTGTTTCCTGTTTT
ATTGGAATTAGAATTATTGGGGTTGATAAGGGCAAATTCTGGGAGGAGATATTCTATCATTTAG

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (77-281)

• DprA winged helix domain (DprA_WH) (309-361)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	100	100	1