Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V2H88_RS04135 Genome accession   NZ_CP144351
Coordinates   889726..890379 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer strain RA-3M     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 884726..895379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2H88_RS04115 (V2H88_04115) - 885546..886628 (-) 1083 WP_004918073.1 serine hydrolase domain-containing protein -
  V2H88_RS04120 (V2H88_04120) - 886739..888394 (-) 1656 WP_004918074.1 ribonucleoside-diphosphate reductase subunit alpha -
  V2H88_RS04125 (V2H88_04125) - 888442..889416 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  V2H88_RS04130 (V2H88_04130) - 889498..889638 (+) 141 WP_015345427.1 hypothetical protein -
  V2H88_RS04135 (V2H88_04135) comF 889726..890379 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  V2H88_RS04145 (V2H88_04145) - 890601..891152 (-) 552 WP_004918080.1 hypothetical protein -
  V2H88_RS04150 (V2H88_04150) - 891207..891857 (-) 651 WP_004918082.1 HD domain-containing protein -
  V2H88_RS04155 (V2H88_04155) gdhA 891989..893347 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  V2H88_RS04160 (V2H88_04160) dprA 893531..894634 (-) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  V2H88_RS04165 (V2H88_04165) - 894637..895014 (-) 378 WP_004918086.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=933673 V2H88_RS04135 WP_004918078.1 889726..890379(-) (comF) [Riemerella anatipestifer strain RA-3M]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=933673 V2H88_RS04135 WP_004918078.1 889726..890379(-) (comF) [Riemerella anatipestifer strain RA-3M]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1