Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V3H91_RS18460 Genome accession   NZ_CP144281
Coordinates   3612580..3613269 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-024A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3607580..3618269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS18425 fliW 3607671..3608102 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  V3H91_RS18430 - 3608132..3608701 (-) 570 WP_007407476.1 DUF6470 family protein -
  V3H91_RS18435 flgL 3608792..3609709 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  V3H91_RS18440 flgK 3609721..3611238 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  V3H91_RS18445 - 3611254..3611736 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V3H91_RS18450 flgM 3611751..3612017 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V3H91_RS18455 - 3612087..3612506 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  V3H91_RS18460 comFC 3612580..3613269 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  V3H91_RS18465 - 3613275..3613559 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  V3H91_RS18470 comFA 3613617..3615002 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  V3H91_RS18475 - 3615110..3615958 (-) 849 WP_003151387.1 DegV family protein -
  V3H91_RS18480 degU 3616056..3616745 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V3H91_RS18485 degS 3616822..3617985 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=933389 V3H91_RS18460 WP_196769287.1 3612580..3613269(-) (comFC) [Bacillus velezensis strain SEC-024A]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=933389 V3H91_RS18460 WP_196769287.1 3612580..3613269(-) (comFC) [Bacillus velezensis strain SEC-024A]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603