Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V3H91_RS16545 Genome accession   NZ_CP144281
Coordinates   3247163..3247303 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain SEC-024A     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3242163..3252303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS16520 - 3242507..3242890 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  V3H91_RS16525 comA 3242912..3243556 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V3H91_RS16530 - 3243637..3245939 (-) 2303 Protein_3193 histidine kinase -
  V3H91_RS16535 comX 3245953..3246126 (-) 174 WP_012118314.1 competence pheromone ComX -
  V3H91_RS16540 - 3246095..3246955 (-) 861 WP_159073777.1 polyprenyl synthetase family protein -
  V3H91_RS16545 degQ 3247163..3247303 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V3H91_RS16550 - 3247769..3248110 (+) 342 WP_014305721.1 hypothetical protein -
  V3H91_RS16555 - 3248117..3249337 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  V3H91_RS16560 - 3249467..3250933 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  V3H91_RS16565 - 3250951..3251502 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  V3H91_RS16570 - 3251599..3251997 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=933386 V3H91_RS16545 WP_003152043.1 3247163..3247303(-) (degQ) [Bacillus velezensis strain SEC-024A]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=933386 V3H91_RS16545 WP_003152043.1 3247163..3247303(-) (degQ) [Bacillus velezensis strain SEC-024A]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891