Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V3H91_RS16525 Genome accession   NZ_CP144281
Coordinates   3242912..3243556 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SEC-024A     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3237912..3248556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS16490 - 3239097..3239528 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  V3H91_RS16495 - 3239528..3239869 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  V3H91_RS16500 - 3239862..3241343 (+) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  V3H91_RS16505 - 3241349..3241825 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  V3H91_RS16510 - 3241825..3242109 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  V3H91_RS16515 mnhG 3242093..3242467 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  V3H91_RS16520 - 3242507..3242890 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  V3H91_RS16525 comA 3242912..3243556 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V3H91_RS16530 - 3243637..3245939 (-) 2303 Protein_3193 histidine kinase -
  V3H91_RS16535 comX 3245953..3246126 (-) 174 WP_012118314.1 competence pheromone ComX -
  V3H91_RS16540 - 3246095..3246955 (-) 861 WP_159073777.1 polyprenyl synthetase family protein -
  V3H91_RS16545 degQ 3247163..3247303 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V3H91_RS16550 - 3247769..3248110 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=933385 V3H91_RS16525 WP_003152052.1 3242912..3243556(-) (comA) [Bacillus velezensis strain SEC-024A]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=933385 V3H91_RS16525 WP_003152052.1 3242912..3243556(-) (comA) [Bacillus velezensis strain SEC-024A]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864