Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V3435_RS07960 Genome accession   NZ_CP144270
Coordinates   1611406..1611801 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain LA52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1606406..1616801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3435_RS07935 (V3435_07930) thiE 1607005..1607646 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  V3435_RS07940 (V3435_07935) thiM 1607648..1608439 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  V3435_RS07945 (V3435_07940) thiD 1608423..1609253 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V3435_RS07950 (V3435_07945) tenA 1609246..1609935 (-) 690 WP_000396068.1 thiaminase II -
  V3435_RS07955 (V3435_07950) sceD 1610322..1611017 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  V3435_RS07960 (V3435_07955) ssb 1611406..1611801 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  V3435_RS07965 (V3435_07960) - 1611995..1612435 (+) 441 WP_000846746.1 YwpF-like family protein -
  V3435_RS07970 (V3435_07965) fabZ 1612492..1612932 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V3435_RS07975 (V3435_07970) murA 1612966..1614231 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V3435_RS07980 (V3435_07975) - 1614342..1614575 (-) 234 WP_000384523.1 DUF1146 family protein -
  V3435_RS07985 (V3435_07980) - 1615228..1615632 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=933125 V3435_RS07960 WP_000932694.1 1611406..1611801(-) (ssb) [Staphylococcus aureus strain LA52]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=933125 V3435_RS07960 WP_000932694.1 1611406..1611801(-) (ssb) [Staphylococcus aureus strain LA52]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992