Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V3O04_RS02275 Genome accession   NZ_CP144242
Coordinates   487880..488515 (-) Length   211 a.a.
NCBI ID   WP_000472267.1    Uniprot ID   N9K0C6
Organism   Acinetobacter baumannii strain SRM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482880..493515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3O04_RS02240 (V3O04_02240) mlaE 483216..483992 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  V3O04_RS02245 (V3O04_02245) - 483992..484672 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  V3O04_RS02250 (V3O04_02250) - 484699..485340 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  V3O04_RS02255 (V3O04_02255) - 485352..485639 (+) 288 WP_000250997.1 STAS domain-containing protein -
  V3O04_RS02260 (V3O04_02260) - 485709..486722 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  V3O04_RS02265 (V3O04_02265) - 486880..487461 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  V3O04_RS02270 (V3O04_02270) - 487476..487877 (+) 402 WP_000849704.1 NUDIX domain-containing protein -
  V3O04_RS02275 (V3O04_02275) comF 487880..488515 (-) 636 WP_000472267.1 phosphoribosyltransferase family protein Machinery gene
  V3O04_RS02280 (V3O04_02280) recG 488508..490553 (-) 2046 WP_000204955.1 ATP-dependent DNA helicase RecG -
  V3O04_RS02285 (V3O04_02285) - 490574..491389 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  V3O04_RS02290 (V3O04_02290) adeT2 491469..492455 (+) 987 WP_002058258.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24572.77 Da        Isoelectric Point: 9.8358

>NTDB_id=932838 V3O04_RS02275 WP_000472267.1 487880..488515(-) (comF) [Acinetobacter baumannii strain SRM3]
MFKFLNPQYLFQLLSPCLLCEIGKREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=932838 V3O04_RS02275 WP_000472267.1 487880..488515(-) (comF) [Acinetobacter baumannii strain SRM3]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAAAACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(161-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K0C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986