Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VWP12_RS02215 Genome accession   NZ_CP144142
Coordinates   467186..468541 (+) Length   451 a.a.
NCBI ID   WP_410474420.1    Uniprot ID   -
Organism   Guyparkeria sp. TX1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 462186..473541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWP12_RS02195 (VWP12_02195) phoU 462219..462941 (-) 723 WP_410474416.1 phosphate signaling complex protein PhoU -
  VWP12_RS02200 (VWP12_02200) ppk1 463113..465188 (+) 2076 WP_410474417.1 polyphosphate kinase 1 -
  VWP12_RS02205 (VWP12_02205) - 465325..465564 (+) 240 WP_410474418.1 PP0621 family protein -
  VWP12_RS02210 (VWP12_02210) - 465561..467189 (+) 1629 WP_410474419.1 sensor histidine kinase -
  VWP12_RS02215 (VWP12_02215) pilR 467186..468541 (+) 1356 WP_410474420.1 sigma-54-dependent transcriptional regulator Regulator
  VWP12_RS02220 (VWP12_02220) sixA 468605..469111 (-) 507 WP_410474421.1 phosphohistidine phosphatase SixA -
  VWP12_RS02225 (VWP12_02225) - 469297..469839 (+) 543 WP_410474422.1 FHA domain-containing protein -
  VWP12_RS02230 (VWP12_02230) - 469847..471544 (+) 1698 WP_410474423.1 protein kinase domain-containing protein -
  VWP12_RS02235 (VWP12_02235) - 471573..472592 (-) 1020 WP_410474424.1 hypothetical protein -
  VWP12_RS02240 (VWP12_02240) - 472624..473430 (-) 807 WP_410474425.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49564.53 Da        Isoelectric Point: 5.2740

>NTDB_id=932494 VWP12_RS02215 WP_410474420.1 467186..468541(+) (pilR) [Guyparkeria sp. TX1]
MKTMAYCLIVDDEPDIRTLVALFMKREGVTTLEAADLAEARERLAANEEIDLCLADMRLPDGNGLDLVDEIRQQRPDLPV
AVITAHGQVEAAVRALKAGAFDFINKPIEQDTLRRLLRDARNLQPGRPTTNAPAETDGGDSPLIGQSRAMRQLREMIGRL
ARSQAPIFIQGESGTGKELVAREIHNHSSRAGGPFVPVNCGAIPGELIESELFGHHKGSFTGATRDKPGLFRAAEGGTLF
LDEIAELPLPLQVSLLRVLQERRVRPVGGTEEVPIDVRIVSASHQDLNQAVTDGRFRQDLFFRLNVIGLRVPPLRERLDD
LPALASAIVARLAARDQRPVPGIDPAVLQTLASQPFPGNVRELENLLERAMALTDGERITDQAVAPHPMMTGEEEPGSAL
GACPGFIPETDEQHDVLAALQQTRWNRSEAARRLGMTLRQLRYRLQKWGVE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=932494 VWP12_RS02215 WP_410474420.1 467186..468541(+) (pilR) [Guyparkeria sp. TX1]
ATGAAGACGATGGCGTACTGCCTGATCGTGGACGACGAGCCGGACATCCGCACGCTGGTCGCCCTGTTCATGAAGCGCGA
AGGGGTCACCACCCTCGAGGCCGCCGACCTGGCCGAGGCCCGCGAGCGGTTGGCGGCGAACGAGGAGATCGACCTGTGTC
TCGCCGACATGCGTCTGCCCGACGGCAACGGGCTGGACCTGGTCGACGAGATCCGCCAACAGCGTCCCGATCTGCCGGTG
GCGGTGATCACTGCCCACGGCCAGGTGGAGGCCGCCGTCCGGGCGCTCAAGGCCGGGGCCTTCGACTTCATCAACAAGCC
GATCGAGCAGGACACCCTGCGCCGCCTGCTGCGCGACGCGCGCAACCTGCAACCCGGCCGACCGACGACAAATGCCCCCG
CCGAGACGGATGGCGGTGACTCGCCCCTGATCGGCCAGTCGCGCGCCATGCGCCAGTTGCGCGAGATGATCGGCCGGCTG
GCGCGCTCGCAGGCGCCGATCTTCATCCAGGGCGAGTCCGGCACCGGCAAGGAGCTGGTCGCCCGCGAGATACACAACCA
CAGCAGCCGCGCGGGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCCGGCGAGCTGATCGAGTCCGAACTGTTCG
GCCACCACAAGGGATCGTTCACCGGCGCGACCCGCGACAAGCCCGGCCTGTTCCGGGCGGCCGAGGGCGGCACCCTGTTT
CTCGACGAGATCGCCGAACTGCCGCTGCCCCTGCAGGTCAGCCTGCTGCGGGTGCTGCAGGAGCGTCGCGTACGGCCGGT
GGGTGGCACCGAGGAGGTACCCATCGACGTGCGGATCGTCTCGGCCTCGCACCAGGATCTCAACCAGGCGGTGACCGATG
GCCGATTCCGCCAGGACCTGTTCTTCCGCCTGAACGTGATCGGCCTGCGCGTGCCGCCGCTGCGCGAACGCCTCGACGAC
CTGCCGGCACTCGCCTCGGCGATCGTCGCCCGGCTGGCCGCACGTGACCAGCGCCCGGTGCCCGGCATCGATCCCGCCGT
GCTGCAGACCCTGGCCAGCCAGCCCTTCCCGGGCAACGTGCGGGAACTGGAAAACCTGCTCGAACGCGCCATGGCCCTGA
CCGACGGCGAGCGGATCACCGATCAGGCCGTCGCGCCGCACCCGATGATGACCGGCGAGGAGGAGCCCGGCTCGGCCCTG
GGTGCCTGCCCCGGCTTCATCCCGGAGACCGACGAACAGCACGACGTGCTTGCCGCCCTGCAGCAGACCCGCTGGAATCG
CAGCGAGGCCGCCCGCCGACTGGGAATGACCCTGCGCCAGTTGCGTTATCGCTTGCAGAAGTGGGGAGTGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(417-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.084

100

0.534
  pilR Acinetobacter baumannii strain A118

46.436

100

0.477