Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   VXF94_RS19165 Genome accession   NZ_CP143956
Coordinates   3697908..3698708 (+) Length   266 a.a.
NCBI ID   WP_013352825.1    Uniprot ID   A0A9P1JIH1
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692908..3703708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS19145 (VXF94_19145) - 3693030..3693875 (+) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  VXF94_RS19150 (VXF94_19150) ahrC 3693972..3694421 (+) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  VXF94_RS19155 (VXF94_19155) recN 3694453..3696183 (+) 1731 WP_013352827.1 DNA repair protein RecN Machinery gene
  VXF94_RS19160 (VXF94_19160) spoIVB 3696347..3697627 (+) 1281 WP_014470651.1 SpoIVB peptidase -
  VXF94_RS19165 (VXF94_19165) spo0A 3697908..3698708 (+) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  VXF94_RS19170 (VXF94_19170) - 3698703..3698837 (-) 135 WP_014470649.1 hypothetical protein -
  VXF94_RS19175 (VXF94_19175) alr 3698898..3700080 (-) 1183 Protein_3722 alanine racemase -
  VXF94_RS19180 (VXF94_19180) - 3700266..3700478 (-) 213 WP_013352823.1 spore germination protein -
  VXF94_RS19185 (VXF94_19185) - 3700603..3700815 (-) 213 WP_014470647.1 spore germination protein -
  VXF94_RS19190 (VXF94_19190) - 3700942..3702060 (-) 1119 WP_038463265.1 NADH-dependent flavin oxidoreductase -
  VXF94_RS19195 (VXF94_19195) - 3702154..3702291 (-) 138 WP_014470646.1 hypothetical protein -
  VXF94_RS19200 (VXF94_19200) - 3702584..3703216 (-) 633 WP_013352819.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29572.07 Da        Isoelectric Point: 6.3903

>NTDB_id=932246 VXF94_RS19165 WP_013352825.1 3697908..3698708(+) (spo0A) [Bacillus amyloliquefaciens strain Fad 108]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVLGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=932246 VXF94_RS19165 WP_013352825.1 3697908..3698708(+) (spo0A) [Bacillus amyloliquefaciens strain Fad 108]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGCTCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCCTACTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGCAATGTCAGCAGCGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGTCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTTCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCATGCCATTGAAGTTGCATGGAGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTGAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951