Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VXF94_RS19155 Genome accession   NZ_CP143956
Coordinates   3694453..3696183 (+) Length   576 a.a.
NCBI ID   WP_013352827.1    Uniprot ID   A0A9P1JI53
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3689453..3701183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS19130 (VXF94_19130) - 3689855..3690109 (+) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -
  VXF94_RS19135 (VXF94_19135) - 3690099..3690989 (+) 891 WP_013352831.1 polyprenyl synthetase family protein -
  VXF94_RS19140 (VXF94_19140) dxs 3691132..3693033 (+) 1902 WP_014472093.1 1-deoxy-D-xylulose-5-phosphate synthase -
  VXF94_RS19145 (VXF94_19145) - 3693030..3693875 (+) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  VXF94_RS19150 (VXF94_19150) ahrC 3693972..3694421 (+) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  VXF94_RS19155 (VXF94_19155) recN 3694453..3696183 (+) 1731 WP_013352827.1 DNA repair protein RecN Machinery gene
  VXF94_RS19160 (VXF94_19160) spoIVB 3696347..3697627 (+) 1281 WP_014470651.1 SpoIVB peptidase -
  VXF94_RS19165 (VXF94_19165) spo0A 3697908..3698708 (+) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  VXF94_RS19170 (VXF94_19170) - 3698703..3698837 (-) 135 WP_014470649.1 hypothetical protein -
  VXF94_RS19175 (VXF94_19175) alr 3698898..3700080 (-) 1183 Protein_3722 alanine racemase -
  VXF94_RS19180 (VXF94_19180) - 3700266..3700478 (-) 213 WP_013352823.1 spore germination protein -
  VXF94_RS19185 (VXF94_19185) - 3700603..3700815 (-) 213 WP_014470647.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64076.93 Da        Isoelectric Point: 4.7328

>NTDB_id=932245 VXF94_RS19155 WP_013352827.1 3694453..3696183(+) (recN) [Bacillus amyloliquefaciens strain Fad 108]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSETVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSADEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=932245 VXF94_RS19155 WP_013352827.1 3694453..3696183(+) (recN) [Bacillus amyloliquefaciens strain Fad 108]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATCTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTAGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCTTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAACTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCAACCTTTCAGATGCGCAATTTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTGGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTTCTTGTG
AAAACCGATCCGTCAGCCGATGAAGCGCCAGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGCATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCTCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGGACGACGACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891