Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VXF94_RS16105 Genome accession   NZ_CP143956
Coordinates   3128578..3129222 (+) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3123578..3134222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS16080 (VXF94_16080) - 3124000..3124341 (-) 342 WP_013353399.1 hypothetical protein -
  VXF94_RS16085 (VXF94_16085) degQ 3124806..3124946 (+) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  VXF94_RS16090 (VXF94_16090) - 3125098..3125973 (+) 876 WP_013353397.1 polyprenyl synthetase family protein -
  VXF94_RS16095 (VXF94_16095) comX 3125992..3126168 (+) 177 WP_013353396.1 competence pheromone ComX -
  VXF94_RS16100 (VXF94_16100) comP 3126191..3128497 (+) 2307 WP_013353395.1 sensor histidine kinase Regulator
  VXF94_RS16105 (VXF94_16105) comA 3128578..3129222 (+) 645 WP_014472195.1 response regulator transcription factor Regulator
  VXF94_RS16110 (VXF94_16110) - 3129244..3129627 (+) 384 WP_013353393.1 hotdog fold thioesterase -
  VXF94_RS16115 (VXF94_16115) mnhG 3129667..3130041 (-) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  VXF94_RS16120 (VXF94_16120) - 3130025..3130309 (-) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  VXF94_RS16125 (VXF94_16125) - 3130309..3130785 (-) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  VXF94_RS16130 (VXF94_16130) - 3130791..3132272 (-) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  VXF94_RS16135 (VXF94_16135) - 3132265..3132606 (-) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  VXF94_RS16140 (VXF94_16140) - 3132606..3133037 (-) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=932225 VXF94_RS16105 WP_014472195.1 3128578..3129222(+) (comA) [Bacillus amyloliquefaciens strain Fad 108]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=932225 VXF94_RS16105 WP_014472195.1 3128578..3129222(+) (comA) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATT
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86