Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   VXF94_RS16100 Genome accession   NZ_CP143956
Coordinates   3126191..3128497 (+) Length   768 a.a.
NCBI ID   WP_013353395.1    Uniprot ID   A0A9P1NIX4
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3121191..3133497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS16075 (VXF94_16075) - 3122770..3123993 (+) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  VXF94_RS16080 (VXF94_16080) - 3124000..3124341 (-) 342 WP_013353399.1 hypothetical protein -
  VXF94_RS16085 (VXF94_16085) degQ 3124806..3124946 (+) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  VXF94_RS16090 (VXF94_16090) - 3125098..3125973 (+) 876 WP_013353397.1 polyprenyl synthetase family protein -
  VXF94_RS16095 (VXF94_16095) comX 3125992..3126168 (+) 177 WP_013353396.1 competence pheromone ComX -
  VXF94_RS16100 (VXF94_16100) comP 3126191..3128497 (+) 2307 WP_013353395.1 sensor histidine kinase Regulator
  VXF94_RS16105 (VXF94_16105) comA 3128578..3129222 (+) 645 WP_014472195.1 response regulator transcription factor Regulator
  VXF94_RS16110 (VXF94_16110) - 3129244..3129627 (+) 384 WP_013353393.1 hotdog fold thioesterase -
  VXF94_RS16115 (VXF94_16115) mnhG 3129667..3130041 (-) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  VXF94_RS16120 (VXF94_16120) - 3130025..3130309 (-) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  VXF94_RS16125 (VXF94_16125) - 3130309..3130785 (-) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  VXF94_RS16130 (VXF94_16130) - 3130791..3132272 (-) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  VXF94_RS16135 (VXF94_16135) - 3132265..3132606 (-) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  VXF94_RS16140 (VXF94_16140) - 3132606..3133037 (-) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 768 a.a.        Molecular weight: 89564.83 Da        Isoelectric Point: 8.4166

>NTDB_id=932224 VXF94_RS16100 WP_013353395.1 3126191..3128497(+) (comP) [Bacillus amyloliquefaciens strain Fad 108]
MRYFIKHLSIALLIFSFFYIAHIIYFTQNGILVGTYVVETSKHEFEVVKITKSSYGRYLNLKEGDKILQINGHMPSSQNI
KNGYLAKANNLKVERRNHEIQLHGSEDLSLNSSVSFFIYIVPCILFALSLLCIFYIYKVNRIKNTVSAYILICFLIFISI
AYLSAGGVTRGYEINRYVNLFTFLNVPVLYLHFLYQYFKELKIKFSAKSIVYILYCLPVLNIVTELFRYRYDLYFVRDMN
LLSFFIEILIVYMYIVYYAIIYRKRDHAYLLKVLLISNTIAFLPFTVLYLLSEVILGQYIYSAIVTAPFLLIIPLALVYQ
FVVNKIYDIDFLLGRIRYYSFLSIVPTIGVVWLSILYESKGNHFNTIQITLYVFLIFLAVFYTKEVLDYKFRLKRFSEKY
NYQDSIYKYTQLLKSVSALNQVFMNLKKTILDVLPVSKAYIFEISSDGDILYFDKQNIEPNWQPYKKEFDKVTSEIGKII
EVNQGFLMKIGERGANSYILLCLSSINTPRLTRDEISWLKTLSFYTSVSMENILQIEELMNHLQDLKQQGSNPVWLKKLM
FTIEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCHIEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDL
GLVKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGV
GCNQEEGSGQAMSMGLSGIKERVRALDGRMKIDTSEGNGFKADIEMEL

Nucleotide


Download         Length: 2307 bp        

>NTDB_id=932224 VXF94_RS16100 WP_013353395.1 3126191..3128497(+) (comP) [Bacillus amyloliquefaciens strain Fad 108]
TTGAGGTATTTTATTAAGCATCTTTCAATCGCACTGTTGATATTTAGTTTTTTCTATATTGCACATATTATATACTTTAC
CCAGAATGGAATTTTAGTCGGAACCTATGTTGTTGAAACATCAAAACATGAGTTTGAAGTTGTTAAAATTACAAAATCTT
CTTACGGAAGATACTTGAATTTAAAAGAAGGGGACAAAATTCTACAGATAAATGGGCACATGCCTTCTTCTCAAAATATC
AAAAATGGTTATTTAGCAAAGGCTAATAACTTAAAGGTTGAGAGACGTAATCATGAAATTCAATTGCATGGTTCAGAGGA
TTTGTCTTTAAACAGTTCAGTTAGTTTCTTTATTTATATTGTCCCTTGTATATTATTTGCACTAAGCTTATTATGTATTT
TCTATATATACAAAGTCAATCGTATAAAAAATACAGTTTCTGCTTATATTCTAATCTGCTTCTTAATTTTTATATCGATA
GCTTATTTAAGTGCAGGCGGTGTAACAAGAGGATATGAGATAAATAGATATGTTAATCTTTTTACTTTTTTAAATGTGCC
TGTACTATACCTGCATTTTTTATATCAATATTTTAAAGAATTAAAAATAAAATTTTCAGCAAAGAGTATAGTATATATTC
TTTACTGTTTACCTGTCCTTAACATTGTTACAGAACTTTTTAGATATCGATATGATTTATACTTTGTTAGAGACATGAAT
TTATTGTCATTTTTTATCGAGATACTAATAGTGTATATGTATATTGTTTATTATGCCATTATTTATAGAAAGAGAGATCA
TGCTTATCTATTAAAAGTGTTACTAATATCTAACACAATAGCTTTTTTACCATTTACTGTTCTTTATCTTCTTTCTGAAG
TTATTTTAGGACAGTATATTTATTCAGCTATAGTAACTGCTCCGTTTCTGCTCATTATTCCATTGGCATTGGTTTATCAA
TTTGTTGTCAACAAGATTTATGATATAGATTTTTTGTTGGGAAGAATTAGATACTATAGTTTTTTGTCTATTGTTCCTAC
AATAGGGGTTGTATGGCTGTCAATCTTATATGAAAGTAAAGGTAATCATTTTAACACCATTCAAATCACTTTATATGTGT
TTTTGATTTTTTTGGCGGTCTTTTACACCAAAGAGGTTTTAGACTATAAATTCCGTTTGAAACGTTTTTCAGAAAAATAC
AATTATCAAGACAGCATTTATAAATATACACAGCTTCTTAAAAGTGTGTCAGCTTTAAATCAAGTGTTTATGAATCTGAA
AAAGACTATATTGGATGTATTACCTGTAAGTAAGGCTTACATTTTTGAAATCAGTTCAGACGGAGATATTCTTTATTTTG
ATAAACAAAACATCGAACCGAATTGGCAGCCGTATAAAAAAGAATTTGATAAAGTCACATCAGAGATTGGGAAGATAATT
GAAGTAAATCAAGGATTTCTGATGAAGATTGGAGAAAGAGGGGCAAATTCATACATTTTGCTCTGTTTATCCAGCATTAA
TACCCCAAGGCTGACAAGGGATGAAATCTCTTGGTTAAAGACATTGTCTTTTTATACAAGTGTTTCGATGGAAAACATTT
TACAGATCGAAGAACTCATGAACCATTTACAAGATCTAAAACAACAAGGTTCAAACCCGGTCTGGCTCAAAAAGCTGATG
TTTACGATTGAGGAAAAGCAGCGGTCGGATTTGGCCCGTGATCTGCATGATTCGGTGCTGCAGGATTTGATTTCTTTGAA
ACGCCAGTGTGAGCTGTTTCTGGCCGATTTTAAGAAAGAAGAGCCTTGTCACATAGAGGTGCAGGACAAGCTTCATCAGA
TGAATGAGCAGATGTCGGATGTGATTTTGATGACCCGGGAGACGTGTCATGAGCTTCGGCCTCAGCTGCTGTATGATTTG
GGTCTGGTGAAGGCGGTATCCAAGCTTGCCGCTCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGACG
GTTTACGGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATCATTCAGGAATTTCTTTCGAATGCCATGAAGC
ATTCACAGGCGAATGAGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGATGACGGGGTC
GGATGCAATCAGGAGGAAGGCAGCGGACAGGCGATGAGCATGGGGCTTTCGGGTATTAAGGAGCGCGTCCGGGCGCTTGA
CGGCCGGATGAAAATCGACACAAGTGAAGGAAATGGTTTTAAAGCGGATATTGAAATGGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(568-637)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

59.274

100

0.595