Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   VXF94_RS09145 Genome accession   NZ_CP143956
Coordinates   1813625..1814023 (+) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808625..1819023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS09125 (VXF94_09125) - 1811033..1811395 (-) 363 WP_013350971.1 winged helix-turn-helix transcriptional regulator -
  VXF94_RS09130 (VXF94_09130) hxlA 1811627..1812262 (+) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  VXF94_RS09135 (VXF94_09135) hxlB 1812259..1812816 (+) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  VXF94_RS09140 (VXF94_09140) nucA/comI 1813167..1813604 (+) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VXF94_RS09145 (VXF94_09145) nin/comJ 1813625..1814023 (+) 399 WP_013350967.1 competence protein ComJ Regulator
  VXF94_RS09150 (VXF94_09150) - 1814064..1815500 (-) 1437 WP_013350966.1 glycoside hydrolase family 1 protein -
  VXF94_RS09155 (VXF94_09155) - 1815605..1815928 (-) 324 WP_013350965.1 YckD family protein -
  VXF94_RS09160 (VXF94_09160) - 1816002..1816436 (-) 435 WP_013350964.1 RDD family protein -
  VXF94_RS09165 (VXF94_09165) - 1816451..1817587 (-) 1137 WP_041915596.1 zinc-dependent alcohol dehydrogenase -
  VXF94_RS09170 (VXF94_09170) - 1817651..1818853 (-) 1203 WP_013350962.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=932204 VXF94_RS09145 WP_013350967.1 1813625..1814023(+) (nin/comJ) [Bacillus amyloliquefaciens strain Fad 108]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=932204 VXF94_RS09145 WP_013350967.1 1813625..1814023(+) (nin/comJ) [Bacillus amyloliquefaciens strain Fad 108]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765