NTDB

Overview

Name	med	Type	Regulator
Locus tag	VXF94_RS05025	Genome accession	NZ_CP143956
Coordinates	1013333..1014286 (-)	Length	317 a.a.
NCBI ID	WP_013351813.1	Uniprot ID	A0AAP7TCS7
Organism	Bacillus amyloliquefaciens strain Fad 108
Function	regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1008333..1019286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS04995 (VXF94_04995)	-	1008486..1009472 (-)	987	WP_014470616.1	ABC transporter ATP-binding protein	-
VXF94_RS05000 (VXF94_05000)	-	1009646..1010431 (-)	786	WP_014470617.1	DUF2268 domain-containing protein	-
VXF94_RS05005 (VXF94_05005)	fabF	1010515..1011753 (-)	1239	WP_013351817.1	beta-ketoacyl-ACP synthase II	-
VXF94_RS05010 (VXF94_05010)	-	1011777..1012715 (-)	939	WP_013351816.1	beta-ketoacyl-ACP synthase III	-
VXF94_RS05015 (VXF94_05015)	-	1012881..1013099 (+)	219	WP_013351815.1	hypothetical protein	-
VXF94_RS05020 (VXF94_05020)	comZ	1013129..1013320 (-)	192	WP_013351814.1	ComZ family protein	Regulator
VXF94_RS05025 (VXF94_05025)	med	1013333..1014286 (-)	954	WP_013351813.1	BMP family ABC transporter substrate-binding protein	Regulator
VXF94_RS05030 (VXF94_05030)	-	1014380..1014946 (-)	567	WP_013351812.1	hypothetical protein	-
VXF94_RS05035 (VXF94_05035)	-	1015027..1015761 (-)	735	WP_014471691.1	hypothetical protein	-
VXF94_RS05040 (VXF94_05040)	-	1016022..1016210 (+)	189	WP_013351810.1	YjzD family protein	-
VXF94_RS05045 (VXF94_05045)	-	1016251..1016430 (-)	180	WP_013351809.1	YjzC family protein	-
VXF94_RS05050 (VXF94_05050)	argF	1016522..1017476 (-)	955	Protein_1008	ornithine carbamoyltransferase	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 35342.94 Da Isoelectric Point: 4.5494

                                >NTDB_id=932193 VXF94_RS05025 WP_013351813.1 1013333..1014286(-) (med) [Bacillus amyloliquefaciens strain Fad 108]

MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD

LHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKNDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ

PEVDGFIKGAKYENPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSYL

GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide

Download Length: 954 bp

                                >NTDB_id=932193 VXF94_RS05025 WP_013351813.1 1013333..1014286(-) (med) [Bacillus amyloliquefaciens strain Fad 108]

TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGGTGCGCACAAACTCCGTTTAAAGGAAAAAT

TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACCTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA

TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCTGATGAAGATATTTTAAAAGCGATAGATGAT

TTGCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA

TCCCGATATGGAGTTCGTCGTCGCAAACGGAACGGCGAAAAACGATAATGTCACAAGCGTTCATCTCATGGGAGAAGCGA

TGGGCTTTTTCGGGGGAATGACGGCTGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCGTTCTTATGGCAG

CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATACGAAAATCCCGATATCACCGTCAATACTGAATTTACGGACCACTG

GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTGTATCCGGCCGGAGACG

GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGTATCTC

GGCAAAAACACGGTGCTGACAAGCACCGTGCAAAATGTAGACAAAGCTTATACATTAATCGCCGAGCAATATAATAAAGG

TACGCTCAAGAGCGGAGATCACAACTTCGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTTTGGTGGACA

AAGCCTTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
med	Bacillus subtilis subsp. subtilis str. 168	78.549	100	0.785

Detailed information NTG0932193