Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   VXF94_RS05020 Genome accession   NZ_CP143956
Coordinates   1013129..1013320 (-) Length   63 a.a.
NCBI ID   WP_013351814.1    Uniprot ID   A0AAP7TCS9
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008129..1018320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS04995 (VXF94_04995) - 1008486..1009472 (-) 987 WP_014470616.1 ABC transporter ATP-binding protein -
  VXF94_RS05000 (VXF94_05000) - 1009646..1010431 (-) 786 WP_014470617.1 DUF2268 domain-containing protein -
  VXF94_RS05005 (VXF94_05005) fabF 1010515..1011753 (-) 1239 WP_013351817.1 beta-ketoacyl-ACP synthase II -
  VXF94_RS05010 (VXF94_05010) - 1011777..1012715 (-) 939 WP_013351816.1 beta-ketoacyl-ACP synthase III -
  VXF94_RS05015 (VXF94_05015) - 1012881..1013099 (+) 219 WP_013351815.1 hypothetical protein -
  VXF94_RS05020 (VXF94_05020) comZ 1013129..1013320 (-) 192 WP_013351814.1 ComZ family protein Regulator
  VXF94_RS05025 (VXF94_05025) med 1013333..1014286 (-) 954 WP_013351813.1 BMP family ABC transporter substrate-binding protein Regulator
  VXF94_RS05030 (VXF94_05030) - 1014380..1014946 (-) 567 WP_013351812.1 hypothetical protein -
  VXF94_RS05035 (VXF94_05035) - 1015027..1015761 (-) 735 WP_014471691.1 hypothetical protein -
  VXF94_RS05040 (VXF94_05040) - 1016022..1016210 (+) 189 WP_013351810.1 YjzD family protein -
  VXF94_RS05045 (VXF94_05045) - 1016251..1016430 (-) 180 WP_013351809.1 YjzC family protein -
  VXF94_RS05050 (VXF94_05050) argF 1016522..1017476 (-) 955 Protein_1008 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7202.35 Da        Isoelectric Point: 4.3344

>NTDB_id=932192 VXF94_RS05020 WP_013351814.1 1013129..1013320(-) (comZ) [Bacillus amyloliquefaciens strain Fad 108]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMNLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=932192 VXF94_RS05020 WP_013351814.1 1013129..1013320(-) (comZ) [Bacillus amyloliquefaciens strain Fad 108]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
AGGCATTGATCTGTCTATGGAAATGATTCAGCCGTTCATGAACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

87.931

92.063

0.81