Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACB335_RS06960 Genome accession   NZ_CP167022
Coordinates   1380957..1381991 (-) Length   344 a.a.
NCBI ID   WP_031577431.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375957..1386991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB335_RS06925 (ACB335_06925) - 1376733..1377035 (-) 303 WP_011285079.1 YlxQ-related RNA-binding protein -
  ACB335_RS06930 (ACB335_06930) rnpM 1377028..1377324 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  ACB335_RS06935 (ACB335_06935) nusA 1377340..1378497 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  ACB335_RS06940 (ACB335_06940) rimP 1378672..1379208 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  ACB335_RS06950 (ACB335_06950) trmB 1379467..1380102 (-) 636 WP_031488472.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACB335_RS06955 (ACB335_06955) ccrZ 1380102..1380893 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ACB335_RS06960 (ACB335_06960) pptB 1380957..1381991 (-) 1035 WP_031577431.1 ABC transporter permease Regulator
  ACB335_RS06965 (ACB335_06965) pptA 1381994..1382719 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  ACB335_RS06970 (ACB335_06970) - 1382791..1383210 (+) 420 WP_002983376.1 HIT family protein -
  ACB335_RS06975 (ACB335_06975) - 1383207..1383563 (+) 357 WP_031488470.1 hypothetical protein -
  ACB335_RS06980 (ACB335_06980) - 1383674..1384957 (-) 1284 WP_031488469.1 LCP family protein -
  ACB335_RS06985 (ACB335_06985) - 1384966..1385490 (-) 525 WP_031488468.1 GNAT family N-acetyltransferase -
  ACB335_RS06990 (ACB335_06990) tsaE 1385465..1385926 (-) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40256.54 Da        Isoelectric Point: 10.3713

>NTDB_id=931597 ACB335_RS06960 WP_031577431.1 1380957..1381991(-) (pptB) [Streptococcus pyogenes strain Isolate 4]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISIKVKERAYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=931597 ACB335_RS06960 WP_031577431.1 1380957..1381991(-) (pptB) [Streptococcus pyogenes strain Isolate 4]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTATAAAAGTGAAAGAAAGAGCTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCCAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43