Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   VZH09_RS06390 Genome accession   NZ_CP143859
Coordinates   1331827..1333827 (-) Length   666 a.a.
NCBI ID   WP_338462948.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1326827..1338827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS06370 (VZH09_06370) - 1327637..1328869 (+) 1233 WP_338462944.1 NAD(P)/FAD-dependent oxidoreductase -
  VZH09_RS06375 (VZH09_06375) - 1328849..1329406 (-) 558 WP_338462945.1 hypothetical protein -
  VZH09_RS06380 (VZH09_06380) - 1329411..1330643 (-) 1233 WP_338462946.1 type II secretion system F family protein -
  VZH09_RS06385 (VZH09_06385) pilT 1330667..1331755 (-) 1089 WP_338462947.1 type IV pilus twitching motility protein PilT Machinery gene
  VZH09_RS06390 (VZH09_06390) pilB/pilB1 1331827..1333827 (-) 2001 WP_338462948.1 GspE/PulE family protein Machinery gene
  VZH09_RS06395 (VZH09_06395) grpE 1334113..1334736 (+) 624 WP_338462949.1 nucleotide exchange factor GrpE -
  VZH09_RS06400 (VZH09_06400) dnaK 1334842..1336809 (+) 1968 WP_208676341.1 molecular chaperone DnaK -
  VZH09_RS06405 (VZH09_06405) dnaJ 1336956..1338086 (+) 1131 WP_338462950.1 molecular chaperone DnaJ -
  VZH09_RS06410 (VZH09_06410) - 1338083..1338334 (+) 252 WP_208676336.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74275.92 Da        Isoelectric Point: 5.0802

>NTDB_id=931581 VZH09_RS06390 WP_338462948.1 1331827..1333827(-) (pilB/pilB1) [Synechococcus elongatus IITB7]
MPDQPISPRHALIALNQFSSFGNKLVQAGYVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQFRRQQLFELKI
LHGVESLNPEQSQYSEELIHELIADLVPIETCRRHQLLPLERHEAPPRAVIAMVDPNNLDALDELNRLLRPRGYALQRLV
ITLEDYERLVAGYLDQQVERQQAAQAQQLGDFSEELANLESFDLTEISEQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEEGLRVRLRRDGVLHQEFGMLPKKIQAALISRLKIMANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDPDALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRIPYTPSPEELGRYGLSASQELDVTFYKARTLMADELAQARSQGQVCRTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKIGL
TCHTCGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=931581 VZH09_RS06390 WP_338462948.1 1331827..1333827(-) (pilB/pilB1) [Synechococcus elongatus IITB7]
ATGCCAGACCAACCGATTTCCCCCCGCCACGCTCTGATTGCACTCAATCAGTTCTCATCGTTTGGTAACAAGCTGGTCCA
AGCAGGCTACGTCGACCCAGAGCAACTGCAGACAGCTTTAGTGGAAAGTCGGCGAAGTGGCCAGTCTCTGCCGCAAGTCA
TTTCAGCGCTGACTGGTCAGTCCTTACCTCCAGAGCTGATGCAGCAGTTCCGCCGGCAGCAGTTATTCGAGCTGAAGATT
CTGCACGGTGTCGAATCCCTGAATCCTGAACAAAGTCAGTATTCCGAAGAGTTAATTCATGAGCTGATTGCCGATCTCGT
CCCAATCGAAACCTGCCGTCGACACCAGCTCTTGCCCTTGGAACGACATGAGGCTCCCCCACGGGCGGTAATCGCCATGG
TGGACCCTAATAACCTCGATGCACTGGATGAACTTAATCGCCTGTTGCGCCCCAGAGGCTACGCGCTGCAGCGATTGGTG
ATCACACTGGAAGACTACGAACGACTCGTTGCGGGCTATCTCGATCAACAAGTCGAGCGTCAGCAGGCTGCCCAAGCCCA
GCAGTTGGGCGATTTTTCCGAAGAACTCGCCAATCTGGAAAGCTTCGATCTGACAGAAATTTCTGAACAGGAAGAAGATC
TTGCCAAGGCGCTCCAGGAAGCAGATGACGCCCCAATCGTCAGCCTTGCAAACAAGATTCTGCTGAAAGCCTTGACTGAA
GGTGCCTCGGATATTCACGTAGAACCGCAGGAGGAAGGGCTGCGGGTCAGGCTACGCCGAGATGGGGTGCTACACCAAGA
ATTTGGAATGCTCCCGAAAAAAATTCAAGCAGCCTTGATTTCCCGCTTGAAGATCATGGCCAATCTTGATATCGCCGAGC
GTCGTGTTCCCCAAGACGGCCGAATCCGGCGAATGTTTCAGGGCCGCAAGATTGACTTTCGGGTTAATAGTCTGCCTAGC
CATTTCGGCGAAAAAATTTGTATGCGGCTGTTGGACAACTCAGCAACACAGCTGGGTTTAGATCAGTTGATTACCGATCC
AGATGCCCTCGCTCTGGTTCGTGACATGGGAAGTCGTCCCTATGGCTTGATTTTGGTGACTGGCCCAACAGGGTCTGGTA
AGTCCACAAGCCTATATTCCTTGTTGGCAGAGCGCAATGATCCCGCCATCAACATCAACACCGCTGAAGATCCAATTGAA
TACACATTGCCCGGTCTGACCCAAGTGCAGGTGCTCCGAGAGAAGGGCATGAATTTCGCCTCGATCCTGAGGGCTTTTAT
GCGTCAGGATCCCGATGTGATTCTGGTGGGTGAGACACGAGATTTAGAAACAGCTCGCACAGCGATTGAAGCTGCCTTGA
CAGGGCACTTGGTCTTGACGACTCTACATGCCAACGATGCGCCCAGCGCGATTGCCCGTCTAAGTGAGATGGGGGTAGAA
CCTTATCTCGTCTCTGGTTCGCTGATTGGGGTTGTTTCGCAACGCTTAATGCGCCGAGTCTGTCCTGATTGCCGCATTCC
CTATACGCCCAGCCCAGAAGAACTAGGTCGCTATGGTCTCTCAGCCAGCCAAGAACTTGATGTCACATTTTATAAGGCCA
GAACACTAATGGCTGACGAGCTCGCACAGGCGCGATCGCAAGGGCAGGTGTGCAGAACCTGTCGGGGGACAGGCTACAAG
GGACGTGTAGGTGTCTATGAGGTGATGCGGGTTAATGAGGTCCTCCAAGTCGCGATTAACCAGGGGCTACCCACAGAACG
CCTCAAGGAAATTGCTGTGGAGCAGGGCATGAAGACGCTGCTCTCTTACAGCTTGGAACTGGTTCGCCAGGGTTACACCA
CCTTTGAAGAAGTCGATCGCGTCACCTTTACCGATTCTGGTGTGGAGGCTGAGCTCAAAGCAAAGCGTAAAATTGGTCTC
ACTTGCCATACCTGTGGGGCAGGGCTGCAACCGGAATGGCTGGACTGCCCTTATTGCCTAACGCCCCGTTTTGGGAATTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(232-499)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.818

99.099

0.613