Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   VZG28_RS07050 Genome accession   NZ_CP143853
Coordinates   1438203..1440203 (-) Length   666 a.a.
NCBI ID   WP_338442696.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433203..1445203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS07030 (VZG28_07030) - 1434012..1435244 (+) 1233 WP_338442691.1 NAD(P)/FAD-dependent oxidoreductase -
  VZG28_RS07035 (VZG28_07035) - 1435224..1435781 (-) 558 WP_338442692.1 hypothetical protein -
  VZG28_RS07040 (VZG28_07040) - 1435786..1437018 (-) 1233 WP_338442694.1 type II secretion system F family protein -
  VZG28_RS07045 (VZG28_07045) pilT 1437043..1438131 (-) 1089 WP_338431711.1 type IV pilus twitching motility protein PilT Machinery gene
  VZG28_RS07050 (VZG28_07050) pilB/pilB1 1438203..1440203 (-) 2001 WP_338442696.1 GspE/PulE family protein Machinery gene
  VZG28_RS07055 (VZG28_07055) grpE 1440489..1441112 (+) 624 WP_338442697.1 nucleotide exchange factor GrpE -
  VZG28_RS07060 (VZG28_07060) dnaK 1441218..1443185 (+) 1968 WP_338442698.1 molecular chaperone DnaK -
  VZG28_RS07065 (VZG28_07065) dnaJ 1443332..1444462 (+) 1131 WP_338442699.1 molecular chaperone DnaJ -
  VZG28_RS07070 (VZG28_07070) - 1444459..1444710 (+) 252 WP_208676336.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74142.85 Da        Isoelectric Point: 5.1364

>NTDB_id=931570 VZG28_RS07050 WP_338442696.1 1438203..1440203(-) (pilB/pilB1) [Synechococcus elongatus IITB4]
MPDQPISPRHALIALNQFSSFGNKLVQAGYVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQFRRQQLFELKI
LHGVESLNPEQSQYSEELIHELIADLVPIETCRRHQLLPLERHEAPPRAVIAMVDPNNLDALDELNRLLRPRGYALQRLV
ITLEDYERLVAGYLDQQVERQQAAQAQQLGDFSEELASLESLDLTEISVQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEEGLRVRLRRDGVLHQEFGMLPKKIQAALISRLKIMANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDPDALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRIPYTPSPEELGRYGLSASQELDVTFYKARTLMADDLAQARSQGQVCKTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKIGL
TCHTCGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=931570 VZG28_RS07050 WP_338442696.1 1438203..1440203(-) (pilB/pilB1) [Synechococcus elongatus IITB4]
ATGCCAGACCAACCGATTTCCCCCCGCCACGCTCTGATTGCACTCAATCAGTTCTCATCGTTTGGTAACAAGCTGGTCCA
AGCAGGCTACGTCGACCCAGAGCAACTGCAGACAGCTTTAGTGGAAAGTCGGCGAAGTGGCCAGTCTCTGCCGCAAGTCA
TTTCAGCGCTGACTGGTCAGTCCTTACCTCCAGAGCTGATGCAGCAGTTCCGCCGGCAGCAGTTATTCGAGCTGAAGATT
CTGCACGGTGTCGAATCCCTGAATCCTGAACAAAGTCAGTATTCCGAAGAGTTAATTCATGAGCTGATTGCAGATCTCGT
CCCAATCGAAACCTGCCGTCGACACCAGCTCTTGCCCTTGGAACGACATGAGGCTCCCCCACGGGCGGTAATCGCCATGG
TGGACCCTAATAACCTCGATGCACTGGATGAACTTAATCGCCTGTTGCGCCCCAGAGGCTACGCGCTGCAGCGGTTGGTG
ATCACACTGGAGGACTACGAACGACTAGTTGCGGGCTATCTCGATCAACAAGTAGAGCGTCAGCAGGCTGCCCAAGCCCA
GCAGCTAGGAGATTTCTCTGAAGAGCTTGCCAGCCTTGAAAGCCTAGATTTAACAGAGATTTCAGTTCAAGAAGAAGATC
TTGCCAAGGCGCTACAGGAAGCAGATGATGCCCCAATCGTCAGCCTTGCGAACAAGATTCTTCTGAAAGCCTTGACTGAA
GGTGCCTCGGACATTCACGTAGAACCGCAGGAGGAAGGGCTGCGGGTGAGGCTACGCCGAGATGGGGTGCTACACCAAGA
ATTTGGAATGCTCCCGAAAAAAATTCAAGCAGCCTTGATTTCCCGCTTGAAGATCATGGCCAATCTTGATATCGCCGAGC
GTCGTGTTCCCCAAGACGGCCGAATCCGACGCATGTTTCAGGGCCGCAAGATTGACTTTCGGGTTAATAGTCTGCCTAGC
CATTTCGGCGAAAAAATTTGTATGCGGCTGTTGGACAACTCAGCAACACAGCTGGGTTTAGATCAGTTGATTACCGATCC
AGATGCCCTCGCTCTGGTTCGTGACATGGGAAGTCGTCCCTATGGCTTGATTTTGGTGACTGGCCCAACAGGATCTGGTA
AGTCTACAAGCTTGTATTCCTTGTTGGCAGAGCGCAATGATCCCGCCATCAACATCAACACCGCTGAAGATCCAATTGAA
TACACATTGCCCGGTCTGACCCAAGTGCAGGTGCTCCGAGAGAAGGGCATGAATTTCGCCTCGATCCTGAGGGCTTTTAT
GCGTCAGGATCCCGATGTGATTCTGGTGGGTGAGACACGAGATTTAGAAACGGCTCGCACAGCGATTGAAGCTGCCTTGA
CAGGGCACTTGGTCTTGACGACCCTACACGCCAACGATGCGCCCAGCGCGATCGCCCGTCTGAGTGAGATGGGAGTAGAA
CCTTATCTTGTCTCTGGTTCGCTGATTGGGGTGGTGTCGCAACGCTTAATGCGACGAGTCTGTCCTGATTGCCGCATTCC
CTACACTCCCAGCCCAGAAGAACTAGGTCGCTATGGTCTCTCAGCCAGCCAAGAACTTGATGTCACGTTTTACAAGGCCA
GAACACTAATGGCTGACGATCTCGCCCAAGCGCGATCGCAAGGGCAGGTTTGTAAGACCTGTCGGGGGACAGGCTACAAG
GGGCGTGTAGGTGTCTATGAGGTGATGCGGGTTAATGAAGTCCTCCAAGTCGCGATTAACCAGGGGCTACCCACAGAACG
CCTCAAGGAAATTGCTGTGGAGCAGGGCATGAAGACGCTGCTCTCTTACAGCTTGGAACTGGTTCGCCAAGGTTATACCA
CCTTTGAAGAAGTCGATCGCGTCACCTTTACCGATTCTGGTGTGGAAGCTGAGCTCAAAGCAAAGCGTAAAATTGGTCTC
ACTTGCCATACCTGTGGGGCAGGGCTGCAACCGGAATGGCTGGACTGCCCTTATTGCCTAACGCCCCGTTTTGGGAATTA
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-177)

Type II/IV secretion system protein (T2SSE)

(232-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.305

98.949

0.607