Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U6C02_RS09785 Genome accession   NZ_CP143843
Coordinates   1892843..1893487 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain YM-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887843..1898487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS09760 (U6C02_09760) - 1888242..1888583 (-) 342 WP_003152040.1 hypothetical protein -
  U6C02_RS09765 (U6C02_09765) degQ 1889049..1889189 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  U6C02_RS09770 (U6C02_09770) comQ 1889374..1890306 (+) 933 WP_050560672.1 class 1 isoprenoid biosynthesis enzyme Regulator
  U6C02_RS09780 (U6C02_09780) comP 1890459..1892762 (+) 2304 WP_003152050.1 histidine kinase Regulator
  U6C02_RS09785 (U6C02_09785) comA 1892843..1893487 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  U6C02_RS09790 (U6C02_09790) - 1893509..1893892 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  U6C02_RS09795 (U6C02_09795) mnhG 1893932..1894306 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  U6C02_RS09800 (U6C02_09800) - 1894290..1894574 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  U6C02_RS09805 (U6C02_09805) - 1894574..1895050 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  U6C02_RS09810 (U6C02_09810) - 1895056..1896537 (-) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  U6C02_RS09815 (U6C02_09815) - 1896530..1896871 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  U6C02_RS09820 (U6C02_09820) - 1896871..1897302 (-) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=931509 U6C02_RS09785 WP_003152052.1 1892843..1893487(+) (comA) [Bacillus velezensis strain YM-3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=931509 U6C02_RS09785 WP_003152052.1 1892843..1893487(+) (comA) [Bacillus velezensis strain YM-3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864