Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   sa230627_RS02610 Genome accession   NZ_CP143800
Coordinates   553790..554359 (+) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230627barcode06     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548790..559359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  sa230627_RS02585 (sa230627_0491) cysE 550003..550650 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  sa230627_RS02590 (sa230627_0492) cysS 550634..552034 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  sa230627_RS02595 (sa230627_0493) - 552027..552431 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  sa230627_RS02600 (sa230627_0494) rlmB 552439..553185 (+) 747 WP_000390336.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  sa230627_RS02605 (sa230627_0495) - 553185..553709 (+) 525 WP_000664738.1 NYN domain-containing protein -
  sa230627_RS02610 (sa230627_0496) sigH 553790..554359 (+) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  sa230627_RS02615 rpmG 554474..554617 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  sa230627_RS02620 (sa230627_0497) secE 554673..554855 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  sa230627_RS02625 (sa230627_0498) nusG 554868..555416 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  sa230627_RS02630 (sa230627_0499) rplK 555597..556019 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  sa230627_RS02635 (sa230627_0500) rplA 556227..556919 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  sa230627_RS02640 (sa230627_0501) rplJ 557191..557691 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  sa230627_RS02645 (sa230627_0502) rplL 557734..558102 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  sa230627_RS02650 (sa230627_0503) - 558277..558885 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=931445 sa230627_RS02610 WP_000872874.1 553790..554359(+) (sigH) [Staphylococcus aureus strain sa230627barcode06]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=931445 sa230627_RS02610 WP_000872874.1 553790..554359(+) (sigH) [Staphylococcus aureus strain sa230627barcode06]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984