Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V2I11_RS16765 Genome accession   NZ_CP143783
Coordinates   3396242..3396931 (-) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain JSZ06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391242..3401931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I11_RS16730 fliW 3391344..3391775 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  V2I11_RS16735 - 3391805..3392363 (-) 559 Protein_3233 DUF6470 family protein -
  V2I11_RS16740 flgL 3392454..3393371 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  V2I11_RS16745 flgK 3393383..3394900 (-) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  V2I11_RS16750 - 3394916..3395398 (-) 483 WP_032876168.1 flagellar protein FlgN -
  V2I11_RS16755 flgM 3395413..3395679 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V2I11_RS16760 - 3395749..3396168 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  V2I11_RS16765 comFC 3396242..3396931 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  V2I11_RS16770 - 3396937..3397221 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  V2I11_RS16775 comFA 3397279..3398664 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  V2I11_RS16780 - 3398773..3399621 (-) 849 WP_032876160.1 DegV family protein -
  V2I11_RS16785 degU 3399719..3400408 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V2I11_RS16790 degS 3400485..3401648 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=931427 V2I11_RS16765 WP_196770545.1 3396242..3396931(-) (comFC) [Bacillus velezensis strain JSZ06]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=931427 V2I11_RS16765 WP_196770545.1 3396242..3396931(-) (comFC) [Bacillus velezensis strain JSZ06]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594