Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACB327_RS06570 Genome accession   NZ_CP167020
Coordinates   1318693..1319727 (-) Length   344 a.a.
NCBI ID   WP_023610531.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313693..1324727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB327_RS06535 (ACB327_06535) - 1314469..1314771 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  ACB327_RS06540 (ACB327_06540) rnpM 1314764..1315060 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  ACB327_RS06545 (ACB327_06545) nusA 1315076..1316233 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  ACB327_RS06550 (ACB327_06550) rimP 1316408..1316944 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  ACB327_RS06560 (ACB327_06560) trmB 1317203..1317838 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACB327_RS06565 (ACB327_06565) ccrZ 1317838..1318629 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ACB327_RS06570 (ACB327_06570) pptB 1318693..1319727 (-) 1035 WP_023610531.1 ABC transporter permease Regulator
  ACB327_RS06575 (ACB327_06575) pptA 1319730..1320455 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  ACB327_RS06580 (ACB327_06580) - 1320527..1320946 (+) 420 WP_011285081.1 HIT family protein -
  ACB327_RS06585 (ACB327_06585) - 1320943..1321299 (+) 357 WP_002988657.1 hypothetical protein -
  ACB327_RS06590 (ACB327_06590) - 1321410..1322693 (-) 1284 WP_002983372.1 LCP family protein -
  ACB327_RS06595 (ACB327_06595) - 1322702..1323226 (-) 525 WP_030126880.1 GNAT family N-acetyltransferase -
  ACB327_RS06600 (ACB327_06600) tsaE 1323201..1323662 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40256.48 Da        Isoelectric Point: 10.3713

>NTDB_id=931406 ACB327_RS06570 WP_023610531.1 1318693..1319727(-) (pptB) [Streptococcus pyogenes strain Isolate 6]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=931406 ACB327_RS06570 WP_023610531.1 1318693..1319727(-) (pptB) [Streptococcus pyogenes strain Isolate 6]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433
  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43