Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8561_RS05475 Genome accession   NZ_AP028350
Coordinates   1060984..1061532 (+) Length   182 a.a.
NCBI ID   WP_023890499.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1055984..1066532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS05440 (B10420_10620) - 1056115..1056540 (+) 426 WP_002814665.1 N-acetyltransferase -
  R8561_RS05445 - 1056605..1057262 (+) 658 Protein_1049 nitroreductase family protein -
  R8561_RS05450 (B10420_10650) - 1057262..1057867 (+) 606 WP_002777066.1 NAD(P)H-dependent oxidoreductase -
  R8561_RS05455 (B10420_10660) pgsA 1058018..1058554 (+) 537 WP_023890498.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8561_RS05460 (B10420_10670) rseP 1058551..1059657 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  R8561_RS05465 - 1059629..1060511 (+) 883 Protein_1053 VirK family antimicrobial peptide resistance protein -
  R8561_RS05470 (B10420_10700) rpsF 1060598..1060975 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8561_RS05475 (B10420_10710) ssb 1060984..1061532 (+) 549 WP_023890499.1 single-stranded DNA-binding protein Machinery gene
  R8561_RS05480 (B10420_10720) rpsR 1061543..1061803 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  R8561_RS05485 (B10420_10730) lon 1061859..1064234 (-) 2376 WP_002780250.1 endopeptidase La -
  R8561_RS05490 (B10420_10740) - 1064250..1064897 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  R8561_RS05495 (B10420_10750) fliW 1065061..1065450 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  R8561_RS05500 (B10420_10760) proC 1065450..1066187 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  R8561_RS05505 (B10420_10770) ctsT 1066184..1066489 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20652.58 Da        Isoelectric Point: 4.8501

>NTDB_id=93081 R8561_RS05475 WP_023890499.1 1060984..1061532(+) (ssb) [Campylobacter coli strain BCH-10420]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93081 R8561_RS05475 WP_023890499.1 1060984..1061532(+) (ssb) [Campylobacter coli strain BCH-10420]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTAAGATTT
GAACAATGGAGTGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

36.413

100

0.368

Multiple sequence alignment