Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8561_RS05505 | Genome accession | NZ_AP028350 |
| Coordinates | 1066184..1066489 (+) | Length | 101 a.a. |
| NCBI ID | WP_002790525.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain BCH-10420 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1061184..1071489
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8561_RS05480 (B10420_10720) | rpsR | 1061543..1061803 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| R8561_RS05485 (B10420_10730) | lon | 1061859..1064234 (-) | 2376 | WP_002780250.1 | endopeptidase La | - |
| R8561_RS05490 (B10420_10740) | - | 1064250..1064897 (-) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| R8561_RS05495 (B10420_10750) | fliW | 1065061..1065450 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8561_RS05500 (B10420_10760) | proC | 1065450..1066187 (+) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8561_RS05505 (B10420_10770) | ctsT | 1066184..1066489 (+) | 306 | WP_002790525.1 | hypothetical protein | Machinery gene |
| R8561_RS05510 (B10420_10780) | - | 1066482..1067150 (+) | 669 | WP_002790524.1 | hypothetical protein | - |
| R8561_RS05515 (B10420_10790) | - | 1067147..1067599 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8561_RS05520 (B10420_10800) | - | 1067592..1068221 (-) | 630 | WP_002783358.1 | uroporphyrinogen-III synthase | - |
| R8561_RS05525 (B10420_10810) | thiE | 1068199..1068831 (-) | 633 | WP_002783359.1 | thiamine phosphate synthase | - |
| R8561_RS05530 (B10420_10820) | thiD | 1068821..1069633 (-) | 813 | WP_002786353.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8561_RS05535 (B10420_10830) | - | 1069633..1070316 (-) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| R8561_RS05540 (B10420_10840) | - | 1070313..1071074 (-) | 762 | WP_025431509.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12410.27 Da Isoelectric Point: 6.0617
>NTDB_id=93083 R8561_RS05505 WP_002790525.1 1066184..1066489(+) (ctsT) [Campylobacter coli strain BCH-10420]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=93083 R8561_RS05505 WP_002790525.1 1066184..1066489(+) (ctsT) [Campylobacter coli strain BCH-10420]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
48.98 |
97.03 |
0.475 |