Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8561_RS03205 Genome accession   NZ_AP028350
Coordinates   627444..627824 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain BCH-10420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622444..632824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS03185 (B10420_06220) - 622574..624508 (-) 1935 WP_065987987.1 ribonuclease R family protein -
  R8561_RS03190 (B10420_06230) ilvC 624631..625653 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  R8561_RS03195 (B10420_06240) - 625656..626687 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  R8561_RS03200 (B10420_06250) dprA 626677..627447 (+) 771 WP_004284970.1 DNA-processing protein DprA Machinery gene
  R8561_RS03205 (B10420_06260) dprB 627444..627824 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  R8561_RS03210 (B10420_06270) - 627835..628689 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8561_RS03215 (B10420_06280) msrA 628912..629412 (-) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8561_RS03220 (B10420_06290) ppa 629460..629978 (-) 519 WP_002776378.1 inorganic diphosphatase -
  R8561_RS03225 (B10420_06300) - 629988..630563 (-) 576 WP_002781658.1 adenylate kinase -
  R8561_RS03230 (B10420_06310) aspS 630560..632311 (-) 1752 WP_023890629.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=93074 R8561_RS03205 WP_002776373.1 627444..627824(+) (dprB) [Campylobacter coli strain BCH-10420]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=93074 R8561_RS03205 WP_002776373.1 627444..627824(+) (dprB) [Campylobacter coli strain BCH-10420]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment