Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | SNM_RS09460 | Genome accession | NZ_AP025613 |
| Coordinates | 1737020..1738024 (+) | Length | 334 a.a. |
| NCBI ID | WP_024118955.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain SNM6-6 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1732020..1743024
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SNM_RS09425 (TthSNM66_18510) | - | 1732179..1732490 (-) | 312 | WP_244346618.1 | hypothetical protein | - |
| SNM_RS09430 (TthSNM66_18520) | - | 1732498..1732806 (-) | 309 | WP_244346619.1 | helix-turn-helix domain-containing protein | - |
| SNM_RS09435 (TthSNM66_18540) | - | 1733234..1733794 (+) | 561 | WP_244347222.1 | S24 family peptidase | - |
| SNM_RS09440 (TthSNM66_18550) | - | 1733791..1734906 (+) | 1116 | WP_244346620.1 | site-specific integrase | - |
| SNM_RS09450 (TthSNM66_18560) | - | 1735098..1735985 (-) | 888 | WP_011174227.1 | acyltransferase | - |
| SNM_RS09455 (TthSNM66_18570) | era | 1736030..1736935 (-) | 906 | WP_008630929.1 | GTPase Era | - |
| SNM_RS09460 (TthSNM66_18580) | dprA | 1737020..1738024 (+) | 1005 | WP_024118955.1 | DNA-processing protein DprA | Machinery gene |
| SNM_RS09465 (TthSNM66_18590) | - | 1738028..1738936 (-) | 909 | WP_244341216.1 | manganese catalase family protein | - |
| SNM_RS09470 (TthSNM66_18600) | - | 1739046..1739999 (+) | 954 | WP_244346621.1 | hydrogen peroxide-inducible genes activator | - |
| SNM_RS09475 (TthSNM66_18610) | - | 1739986..1740942 (+) | 957 | WP_244346622.1 | branched-chain amino acid transaminase | - |
| SNM_RS09480 (TthSNM66_18620) | - | 1740932..1741120 (+) | 189 | WP_038034982.1 | hypothetical protein | - |
| SNM_RS09485 (TthSNM66_18630) | - | 1741122..1741361 (+) | 240 | WP_008630920.1 | hypothetical protein | - |
| SNM_RS09490 (TthSNM66_18640) | trmH | 1741351..1741935 (-) | 585 | WP_244341211.1 | tRNA (guanosine(18)-2'-O)-methyltransferase TrmH | - |
| SNM_RS09495 (TthSNM66_18650) | hisG | 1741932..1742552 (-) | 621 | WP_244341209.1 | ATP phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 36217.10 Da Isoelectric Point: 6.8892
>NTDB_id=93047 SNM_RS09460 WP_024118955.1 1737020..1738024(+) (dprA) [Thermus thermophilus strain SNM6-6]
MDPLALALLPGIGPKRLLEVLKAEDPLGFLRERFPEAWRHLPEAEAQAERERRRAEALGVRLLGLWEEGFPEGLKALPQP
PTHLYLKGELPPEREAVALVGTRRASPWALAFARRLARELAEAGLWVVSGLARGIDREAHLGALEAGGRTLGVLGSALDR
VYPPENRPLAQRMDLLSEFPFGTGPKPEFFPRRNRLIAGLCRAVVVVEAPLDSGALITARHALELGKEVLAVPGRPTDER
SLGANRLIQDGAYPVLSAEDVLSYLGMSARPKPLPGLSPEEEALYALLQEKKEALPEALAMALGIPPERVLSLLTLLELK
GLARALPGGRYGPG
MDPLALALLPGIGPKRLLEVLKAEDPLGFLRERFPEAWRHLPEAEAQAERERRRAEALGVRLLGLWEEGFPEGLKALPQP
PTHLYLKGELPPEREAVALVGTRRASPWALAFARRLARELAEAGLWVVSGLARGIDREAHLGALEAGGRTLGVLGSALDR
VYPPENRPLAQRMDLLSEFPFGTGPKPEFFPRRNRLIAGLCRAVVVVEAPLDSGALITARHALELGKEVLAVPGRPTDER
SLGANRLIQDGAYPVLSAEDVLSYLGMSARPKPLPGLSPEEEALYALLQEKKEALPEALAMALGIPPERVLSLLTLLELK
GLARALPGGRYGPG
Nucleotide
Download Length: 1005 bp
>NTDB_id=93047 SNM_RS09460 WP_024118955.1 1737020..1738024(+) (dprA) [Thermus thermophilus strain SNM6-6]
GTGGACCCCTTGGCCCTCGCCCTCCTCCCGGGCATCGGCCCCAAGCGGCTTCTGGAGGTCCTAAAGGCGGAGGACCCTCT
GGGCTTCCTGCGGGAGCGCTTCCCCGAGGCCTGGCGGCACCTCCCCGAGGCCGAGGCCCAGGCGGAAAGGGAGAGGCGGC
GCGCCGAGGCCCTAGGGGTGCGCCTCCTGGGCCTCTGGGAGGAGGGCTTCCCCGAGGGGCTGAAGGCGCTTCCCCAGCCG
CCCACCCACCTCTACCTGAAGGGGGAGCTTCCCCCGGAAAGGGAGGCGGTGGCCCTCGTGGGCACGCGCCGGGCCTCCCC
TTGGGCCCTGGCCTTTGCCAGGAGGCTCGCCCGGGAGCTGGCCGAGGCCGGGCTCTGGGTGGTCTCGGGCCTCGCCCGGG
GCATAGACCGGGAGGCCCACCTCGGGGCCCTCGAGGCCGGGGGGCGCACCCTGGGCGTCTTGGGAAGCGCCCTGGACCGG
GTCTACCCCCCGGAAAACCGCCCTTTGGCCCAACGGATGGACCTCCTCTCCGAGTTCCCCTTCGGCACCGGGCCCAAGCC
CGAGTTCTTTCCCCGGCGGAACCGCCTCATCGCCGGGCTTTGCCGGGCGGTGGTCGTGGTGGAGGCCCCCCTGGACTCCG
GGGCCCTCATCACCGCCCGCCACGCCCTGGAGCTCGGCAAGGAGGTGCTGGCCGTGCCCGGAAGGCCCACCGACGAGCGC
TCCCTGGGGGCGAACCGCCTCATCCAGGACGGGGCCTACCCGGTGCTCTCCGCCGAGGACGTCCTCTCCTACCTGGGAAT
GTCCGCAAGGCCCAAGCCCCTCCCGGGCCTCTCCCCGGAGGAGGAGGCCCTTTACGCCCTCCTGCAGGAAAAGAAGGAGG
CGCTCCCCGAGGCCCTGGCCATGGCCCTGGGGATCCCCCCGGAGCGGGTGCTCTCCCTCCTCACCCTTTTGGAGCTAAAG
GGCCTGGCCCGGGCCCTCCCGGGAGGGCGCTACGGGCCAGGCTAA
GTGGACCCCTTGGCCCTCGCCCTCCTCCCGGGCATCGGCCCCAAGCGGCTTCTGGAGGTCCTAAAGGCGGAGGACCCTCT
GGGCTTCCTGCGGGAGCGCTTCCCCGAGGCCTGGCGGCACCTCCCCGAGGCCGAGGCCCAGGCGGAAAGGGAGAGGCGGC
GCGCCGAGGCCCTAGGGGTGCGCCTCCTGGGCCTCTGGGAGGAGGGCTTCCCCGAGGGGCTGAAGGCGCTTCCCCAGCCG
CCCACCCACCTCTACCTGAAGGGGGAGCTTCCCCCGGAAAGGGAGGCGGTGGCCCTCGTGGGCACGCGCCGGGCCTCCCC
TTGGGCCCTGGCCTTTGCCAGGAGGCTCGCCCGGGAGCTGGCCGAGGCCGGGCTCTGGGTGGTCTCGGGCCTCGCCCGGG
GCATAGACCGGGAGGCCCACCTCGGGGCCCTCGAGGCCGGGGGGCGCACCCTGGGCGTCTTGGGAAGCGCCCTGGACCGG
GTCTACCCCCCGGAAAACCGCCCTTTGGCCCAACGGATGGACCTCCTCTCCGAGTTCCCCTTCGGCACCGGGCCCAAGCC
CGAGTTCTTTCCCCGGCGGAACCGCCTCATCGCCGGGCTTTGCCGGGCGGTGGTCGTGGTGGAGGCCCCCCTGGACTCCG
GGGCCCTCATCACCGCCCGCCACGCCCTGGAGCTCGGCAAGGAGGTGCTGGCCGTGCCCGGAAGGCCCACCGACGAGCGC
TCCCTGGGGGCGAACCGCCTCATCCAGGACGGGGCCTACCCGGTGCTCTCCGCCGAGGACGTCCTCTCCTACCTGGGAAT
GTCCGCAAGGCCCAAGCCCCTCCCGGGCCTCTCCCCGGAGGAGGAGGCCCTTTACGCCCTCCTGCAGGAAAAGAAGGAGG
CGCTCCCCGAGGCCCTGGCCATGGCCCTGGGGATCCCCCCGGAGCGGGTGCTCTCCCTCCTCACCCTTTTGGAGCTAAAG
GGCCTGGCCCGGGCCCTCCCGGGAGGGCGCTACGGGCCAGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Thermus thermophilus HB27 |
99.102 |
100 |
0.991 |
| dprA | Vibrio campbellii strain DS40M4 |
38.547 |
100 |
0.413 |
| dprA | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.734 |
87.725 |
0.401 |
| dprA | Vibrio cholerae strain A1552 |
37.535 |
100 |
0.401 |