Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U4D55_RS00880 Genome accession   NZ_CP143641
Coordinates   181596..182108 (+) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain M62.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 176596..187108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4D55_RS00850 (U4D55_00850) - 177567..178448 (+) 882 WP_011276872.1 mechanosensitive ion channel family protein -
  U4D55_RS00855 (U4D55_00855) - 178470..178673 (+) 204 WP_011276871.1 DUF951 domain-containing protein -
  U4D55_RS00860 (U4D55_00860) ychF 178685..179782 (+) 1098 WP_011276870.1 redox-regulated ATPase YchF -
  U4D55_RS00865 (U4D55_00865) - 179924..180115 (-) 192 WP_011276869.1 hypothetical protein -
  U4D55_RS00870 (U4D55_00870) - 180181..180987 (-) 807 WP_011276868.1 glycoside hydrolase family 25 protein -
  U4D55_RS00875 (U4D55_00875) rpsF 181278..181574 (+) 297 WP_011276867.1 30S ribosomal protein S6 -
  U4D55_RS00880 (U4D55_00880) ssbA 181596..182108 (+) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  U4D55_RS00885 (U4D55_00885) rpsR 182156..182398 (+) 243 WP_002447994.1 30S ribosomal protein S18 -
  U4D55_RS00890 (U4D55_00890) - 182617..183687 (-) 1071 WP_011276865.1 Ltp family lipoprotein -
  U4D55_RS00895 (U4D55_00895) - 183890..184147 (-) 258 WP_011276864.1 hypothetical protein -
  U4D55_RS00900 (U4D55_00900) - 184363..185112 (+) 750 Protein_160 amidohydrolase family protein -
  U4D55_RS00905 (U4D55_00905) - 185290..185538 (+) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  U4D55_RS00910 (U4D55_00910) - 185596..185829 (-) 234 WP_180529491.1 hypothetical protein -
  U4D55_RS00920 (U4D55_00920) - 186287..186916 (+) 630 WP_053025259.1 LysE family translocator -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=930195 U4D55_RS00880 WP_011276866.1 181596..182108(+) (ssbA) [Staphylococcus haemolyticus strain M62.3]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=930195 U4D55_RS00880 WP_011276866.1 181596..182108(+) (ssbA) [Staphylococcus haemolyticus strain M62.3]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376