Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U4D54_RS03835 Genome accession   NZ_CP143639
Coordinates   774946..775344 (-) Length   132 a.a.
NCBI ID   WP_011275249.1    Uniprot ID   A0A5B2YX53
Organism   Staphylococcus haemolyticus strain M81.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 769946..780344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4D54_RS03810 (U4D54_03810) thiE 770685..771323 (-) 639 WP_011275254.1 thiamine phosphate synthase -
  U4D54_RS03815 (U4D54_03815) thiM 771325..772116 (-) 792 WP_011275253.1 hydroxyethylthiazole kinase -
  U4D54_RS03820 (U4D54_03820) thiD 772109..772930 (-) 822 WP_016931211.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  U4D54_RS03825 (U4D54_03825) tenA 772923..773612 (-) 690 WP_011275251.1 thiaminase II -
  U4D54_RS03830 (U4D54_03830) - 773900..774607 (-) 708 WP_011275250.1 transglycosylase family protein -
  U4D54_RS03835 (U4D54_03835) ssb 774946..775344 (-) 399 WP_011275249.1 single-stranded DNA-binding protein Machinery gene
  U4D54_RS03840 (U4D54_03840) - 775532..775975 (+) 444 WP_011275248.1 YwpF-like family protein -
  U4D54_RS03845 (U4D54_03845) fabZ 776155..776592 (-) 438 WP_011275247.1 3-hydroxyacyl-ACP dehydratase FabZ -
  U4D54_RS03850 (U4D54_03850) murA 776632..777897 (-) 1266 WP_033079610.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  U4D54_RS03855 (U4D54_03855) - 778002..778235 (-) 234 WP_011275245.1 DUF1146 family protein -
  U4D54_RS03860 (U4D54_03860) - 778363..778764 (-) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  U4D54_RS03865 (U4D54_03865) atpD 778785..780197 (-) 1413 WP_011275243.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.05 Da        Isoelectric Point: 4.7942

>NTDB_id=930172 U4D54_RS03835 WP_011275249.1 774946..775344(-) (ssb) [Staphylococcus haemolyticus strain M81.1]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=930172 U4D54_RS03835 WP_011275249.1 774946..775344(-) (ssb) [Staphylococcus haemolyticus strain M81.1]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742