Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V0410_RS16135 Genome accession   NZ_CP143637
Coordinates   3611077..3612186 (-) Length   369 a.a.
NCBI ID   WP_330744870.1    Uniprot ID   -
Organism   Chryseobacterium sp. CP-77     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3606077..3617186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0410_RS16110 - 3606989..3607960 (+) 972 WP_330744867.1 ion channel -
  V0410_RS16115 - 3607960..3608448 (+) 489 WP_330744868.1 YkgJ family cysteine cluster protein -
  V0410_RS16120 - 3608683..3608985 (+) 303 WP_110009093.1 hypothetical protein -
  V0410_RS16125 - 3609027..3609395 (-) 369 WP_330744869.1 DUF1801 domain-containing protein -
  V0410_RS16130 gdhA 3609528..3610886 (-) 1359 WP_062673086.1 NADP-specific glutamate dehydrogenase -
  V0410_RS16135 dprA 3611077..3612186 (-) 1110 WP_330744870.1 DNA-processing protein DprA Machinery gene
  V0410_RS16140 - 3612220..3612987 (-) 768 WP_227941208.1 rhomboid family intramembrane serine protease -
  V0410_RS16145 - 3613237..3614163 (+) 927 WP_330744871.1 DUF3078 domain-containing protein -
  V0410_RS16150 - 3614391..3615314 (+) 924 WP_202841914.1 DUF3078 domain-containing protein -
  V0410_RS16155 sufD 3615387..3616694 (-) 1308 WP_137904484.1 Fe-S cluster assembly protein SufD -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41242.94 Da        Isoelectric Point: 6.8803

>NTDB_id=930128 V0410_RS16135 WP_330744870.1 3611077..3612186(-) (dprA) [Chryseobacterium sp. CP-77]
MNSEEYFYAIALRECSQIGDIHFHKLVHTFGSAQDAWKRAKKEYKQLDGIGQKTVSDIGNTSHLEFAEDELNFCEKNNIQ
IRLKHLKETPSLLNECNDAPAILYQKGNIENIQPKVSIVGTRNMTAYGKQFLDDFFEATQSSKYLTVSGLALGIDKEVHE
QSIRHQKPTVAVLAHGFKYLYPAKNRKLSEKILLEGGALITEFSSSRKPDRENFIQRNRIVAGISPATIVVETGFGGGSV
STAAFANDYNRDVFALPGKITDSSSQGCNQLIFHHKATAISTVKDLIGLLGLNEPKEKIEELFPYSETITQLSDNQNLIY
QSIKDQPQISLDDLAQKIDLPTHKILPIILELELLGKVKSFSGRQFIAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=930128 V0410_RS16135 WP_330744870.1 3611077..3612186(-) (dprA) [Chryseobacterium sp. CP-77]
ATGAATTCCGAAGAATACTTCTATGCCATCGCCCTCCGCGAGTGCAGCCAGATTGGTGATATCCATTTTCATAAGCTTGT
CCATACTTTCGGAAGCGCTCAGGACGCCTGGAAAAGAGCAAAAAAAGAGTATAAACAACTTGATGGAATAGGACAGAAAA
CAGTTTCAGATATTGGAAATACATCTCATTTGGAATTCGCAGAAGATGAATTAAATTTTTGCGAAAAAAATAATATTCAA
ATCAGGCTGAAACACCTTAAAGAAACGCCCTCCCTGCTTAACGAATGTAATGACGCACCGGCTATCCTTTATCAAAAAGG
GAATATTGAAAATATACAACCTAAGGTAAGTATTGTAGGAACCCGGAATATGACAGCGTATGGGAAACAATTCCTTGACG
ATTTTTTCGAAGCGACACAATCGTCAAAATATTTAACGGTGAGCGGCCTCGCTTTGGGAATCGACAAAGAGGTTCACGAA
CAGTCTATTCGTCATCAAAAACCTACGGTAGCTGTTCTTGCCCATGGTTTTAAATATTTATATCCTGCCAAAAACAGAAA
ACTATCTGAAAAAATTTTACTGGAAGGTGGTGCATTAATCACAGAGTTTAGTTCATCCAGAAAACCCGATCGGGAAAACT
TCATCCAGAGAAACAGAATTGTGGCAGGAATATCTCCGGCAACGATTGTAGTGGAAACCGGTTTTGGAGGAGGCTCTGTA
AGCACCGCAGCCTTTGCTAATGATTATAATCGTGATGTTTTTGCACTGCCCGGAAAAATTACGGACAGCTCCAGCCAGGG
TTGTAATCAGCTGATTTTCCATCATAAAGCGACAGCTATTTCTACCGTGAAAGACCTTATCGGACTCCTTGGATTAAATG
AACCCAAAGAAAAAATAGAAGAGTTATTTCCTTATAGTGAGACTATTACCCAATTATCTGATAATCAAAACTTAATATAT
CAATCTATTAAAGACCAGCCTCAGATTTCTTTAGATGATCTGGCACAGAAAATTGATCTTCCTACCCACAAAATCTTACC
AATAATTTTGGAATTGGAACTTTTAGGGAAAGTAAAATCATTTTCCGGGAGGCAATTCATCGCAATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)

DprA winged helix domain (DprA_WH)

(309-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

50

99.187

0.496