Detailed information NTG0930123

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: V0410_RS12130
• Genome accession: NZ_CP143637
• Coordinates: 2743397..2744746 (+)
• Length: 449 a.a.
• NCBI ID: WP_110008141.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. CP-77
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2738397..2749746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V0410_RS12115	yidC	2738875..2740674 (-)	1800	WP_227943270.1	membrane protein insertase YidC	-
V0410_RS12120	-	2740853..2742460 (-)	1608	WP_110008139.1	CTP synthase	-
V0410_RS12125	-	2742687..2743256 (-)	570	WP_330743321.1	YceI family protein	-
V0410_RS12130	radA	2743397..2744746 (+)	1350	WP_110008141.1	DNA repair protein RadA	Machinery gene
V0410_RS12135	-	2744840..2745433 (+)	594	WP_330743325.1	ACP phosphodiesterase	-
V0410_RS12140	-	2745439..2745954 (-)	516	WP_330743327.1	DUF6702 family protein	-
V0410_RS12145	-	2746032..2749250 (-)	3219	WP_330743328.1	S8/S53 family peptidase	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49971.55 Da
• Isoelectric Point: 6.5083

>NTDB_id=930123 V0410_RS12130 WP_110008141.1 2743397..2744746(+) (radA) [Chryseobacterium sp. CP-77]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=930123 V0410_RS12130 WP_110008141.1 2743397..2744746(+) (radA) [Chryseobacterium sp. CP-77]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATCCTCAATGGCTGGGGCAATGTAAAAACTG
TGGAGAGTGGAATACATTAGTGGAAGAGGTTGTAGAAAAACCTTCTCACAAAACGCCTCCCTTTTCGAAAACCAAACAAC
ATGTTATCAATATTGTTGAAGTGGAAACGAGCGAAGAGCCGAGAATAAAAACACCTTCCGAAGAGCTGAACCGTGTTTTA
GGAGGCGGCATCGTTTTAGGTTCTGTAACTCTGATTGGTGGTGAACCGGGAATCGGGAAATCTACCCTTCTGCTTCAGCT
TGCTTTAAAAATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAAAGTGCTTCTCAGATCAAAATGAGAGCAGACAGGC
TTACGGATATTCAGAATCCGAACTGTTTTCTTTTTACGGAAACTTCACTGGAAAAAATCCTTCATGAGGCTAAAAAGCTG
GAGCCGGATTTCATGATTATCGATTCTATACAGACCCTTCAGTCTCAATTGATAGAAAGTTCTCCGGGAACAGTATCCCA
AATCCGCGAATGCTCCAATGAGATCATCAAATATGCCAAAGAAAACAATACTCCGGTATTTCTTGTAGGCCACATCACCA
AAGACGGACAGATTGCCGGACCAAAGGTTCTTGAGCACATGGTGGATGTCGTCCTGAATTTTGACGGAGACCGGAATCAC
CTGTTCAGATTACTAAGAGCCAATAAAAACCGTTTCGGATCCACTTCAGAAATCGGAATTTATGAAATGATCTCACAGGG
ATTGAAAGAGATTAAAAACCCTTCGGAAATTCTGATTACCAAAAAGTTTGAGGAACTTTCAGGGAACTCCGTTGCAGTAA
CTCTGGAAGGAAACCGACCGATGCTTCTTGAAATACAGGCATTGGTAAGTACCGCCGTTTATGGTACTCCTCAAAGAAGC
AGCACCGGTTTTGATTCCAAAAGACTGAATATGCTTTTGGCCGTACTGGAAAAAAGAGCAGGTTTTCAGTTGGGAGCAAA
AGACGTCTTCCTTAATATTACCGGAGGAATAAAGACAGACGATCCGGCACTGGATCTGGCAGTGATCGCTTCTGTTCTTT
CATCCAATGAGGATATCGCTATTTCCGAACATTACTGCTTTGCCGGAGAAATTGGTCTGAGTGGAGAAATACGTCCGGTA
GCCCAGATTGAACAGAGAATTACTGAAGCGGAAAAATTGGGTTATGAAAAAATATTTGTTTCCAACCTTAATAAAATCCC
GAAAAGAAAATTTGGAATCAAGATTGAAGAAGTGAGTAAAATTGAGGATTTTCACGAGAGGCTTTTCTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

• AAA domain (AAA_25) (64-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.115	100	0.494
radA	Streptococcus pneumoniae Rx1	48.465	100	0.492
radA	Streptococcus pneumoniae D39	48.465	100	0.492
radA	Streptococcus pneumoniae R6	48.465	100	0.492
radA	Streptococcus pneumoniae TIGR4	48.465	100	0.492
radA	Streptococcus mitis NCTC 12261	48.465	100	0.492
radA	Streptococcus mitis SK321	50.355	94.209	0.474