Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VP472_RS11920 Genome accession   NZ_CP143632
Coordinates   2461558..2461995 (-) Length   145 a.a.
NCBI ID   WP_025852922.1    Uniprot ID   -
Organism   Bacillus sp. MT(2024)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2456558..2466995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS11870 (VP472_11870) sinI 2456943..2457116 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  VP472_RS11875 (VP472_11875) sinR 2457150..2457485 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  VP472_RS11880 (VP472_11880) - 2457533..2458318 (-) 786 WP_094247735.1 TasA family protein -
  VP472_RS11885 (VP472_11885) - 2458382..2458966 (-) 585 WP_012117977.1 signal peptidase I -
  VP472_RS11890 (VP472_11890) tapA 2458938..2459609 (-) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  VP472_RS11895 (VP472_11895) - 2459868..2460197 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  VP472_RS11900 (VP472_11900) - 2460237..2460416 (-) 180 WP_003153093.1 YqzE family protein -
  VP472_RS11905 (VP472_11905) comGG 2460473..2460850 (-) 378 WP_094247734.1 competence type IV pilus minor pilin ComGG Machinery gene
  VP472_RS11910 (VP472_11910) comGF 2460851..2461246 (-) 396 WP_094247733.1 competence type IV pilus minor pilin ComGF -
  VP472_RS11915 (VP472_11915) comGE 2461260..2461574 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  VP472_RS11920 (VP472_11920) comGD 2461558..2461995 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  VP472_RS11925 (VP472_11925) comGC 2461985..2462293 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  VP472_RS11930 (VP472_11930) comGB 2462298..2463335 (-) 1038 WP_063174751.1 competence type IV pilus assembly protein ComGB Machinery gene
  VP472_RS11935 (VP472_11935) comGA 2463322..2464392 (-) 1071 WP_070082113.1 competence type IV pilus ATPase ComGA Machinery gene
  VP472_RS11940 (VP472_11940) - 2464584..2465534 (-) 951 WP_071391609.1 magnesium transporter CorA family protein -
  VP472_RS11945 (VP472_11945) - 2465680..2466981 (+) 1302 WP_070082114.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16268.78 Da        Isoelectric Point: 10.1850

>NTDB_id=930040 VP472_RS11920 WP_025852922.1 2461558..2461995(-) (comGD) [Bacillus sp. MT(2024)]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSAGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=930040 VP472_RS11920 WP_025852922.1 2461558..2461995(-) (comGD) [Bacillus sp. MT(2024)]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGCCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTAACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

54.795

100

0.552