Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MWM13_RS01390 Genome accession   NZ_AP025609
Coordinates   243917..244921 (-) Length   334 a.a.
NCBI ID   WP_244347766.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM3-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 238917..249921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM13_RS01355 (TthSNM33_02620) hisG 239389..240009 (+) 621 WP_244347762.1 ATP phosphoribosyltransferase -
  MWM13_RS01360 (TthSNM33_02630) trmH 240006..240590 (+) 585 WP_244347763.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  MWM13_RS01365 (TthSNM33_02640) - 240580..240819 (-) 240 WP_008630920.1 hypothetical protein -
  MWM13_RS01370 (TthSNM33_02650) - 240821..241009 (-) 189 WP_038034982.1 hypothetical protein -
  MWM13_RS01375 (TthSNM33_02660) - 240999..241955 (-) 957 WP_244347764.1 branched-chain amino acid transaminase -
  MWM13_RS01380 (TthSNM33_02670) - 241942..242895 (-) 954 WP_244347765.1 hydrogen peroxide-inducible genes activator -
  MWM13_RS01385 (TthSNM33_02680) - 243005..243913 (+) 909 WP_008630926.1 manganese catalase family protein -
  MWM13_RS01390 (TthSNM33_02690) dprA 243917..244921 (-) 1005 WP_244347766.1 DNA-processing protein DprA Machinery gene
  MWM13_RS01395 (TthSNM33_02700) era 245006..245911 (+) 906 WP_008630929.1 GTPase Era -
  MWM13_RS01400 (TthSNM33_02710) - 245956..246843 (+) 888 WP_143584533.1 acyltransferase -
  MWM13_RS01410 (TthSNM33_02720) - 247041..248015 (+) 975 WP_201351105.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  MWM13_RS01415 (TthSNM33_02730) - 247993..248541 (-) 549 WP_244346578.1 Uma2 family endonuclease -
  MWM13_RS01420 (TthSNM33_02740) - 248551..249771 (-) 1221 WP_244347767.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36203.02 Da        Isoelectric Point: 6.8892

>NTDB_id=93003 MWM13_RS01390 WP_244347766.1 243917..244921(-) (dprA) [Thermus thermophilus strain SNM3-3]
MDPLALALLPGIGPKRLLEVLKAEDPLGFLRERFPEAWRHLPEAEAQAERERRRAEALGVRLLGLWEEGFPEGLKALPQP
PTHLYLKGELPPEREAVALVGTRRASPWALAFARRLARELSEAGLWVVSGLARGIDREAHLGALEAGGRTLGVLGSALDR
VYPPENRPLAQRMDLLSEFPFGTGPKPEFFPRRNRLIAGLCRAVVVVEAPLDSGALITARHALELGKEVLAVPGRPTDER
SLGANRLIQDGAYPVLSAEDVLSYLGMSARPKPLPGLSPEEEALYALLQEKKEALPETLAAALGIPPERVLSLLTLLELK
GLARALPGGRYGPG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=93003 MWM13_RS01390 WP_244347766.1 243917..244921(-) (dprA) [Thermus thermophilus strain SNM3-3]
GTGGACCCCTTGGCCCTCGCCCTCCTCCCGGGCATCGGCCCCAAGCGGCTTCTGGAGGTCCTAAAGGCGGAGGACCCTCT
GGGCTTCCTGCGGGAGCGCTTCCCCGAGGCCTGGCGGCACCTCCCCGAGGCCGAGGCCCAGGCGGAAAGGGAGAGGCGGC
GCGCCGAGGCCCTAGGGGTGCGCCTCCTGGGCCTCTGGGAGGAGGGCTTCCCCGAGGGGCTGAAGGCGCTTCCCCAGCCG
CCCACCCACCTCTACCTGAAGGGGGAGCTTCCCCCGGAAAGGGAGGCGGTGGCCCTCGTGGGCACGCGCCGGGCCTCCCC
TTGGGCCCTGGCCTTTGCCAGGAGGCTCGCCCGGGAGCTTTCCGAGGCCGGGCTCTGGGTGGTCTCGGGCCTCGCCCGGG
GCATAGACCGGGAGGCCCACCTCGGGGCCCTCGAGGCCGGGGGGCGCACCCTGGGCGTCTTGGGAAGCGCCCTGGACCGG
GTCTACCCCCCGGAAAACCGCCCTTTGGCCCAACGGATGGACCTCCTCTCCGAGTTCCCCTTCGGCACCGGGCCCAAGCC
CGAGTTCTTTCCCCGGCGGAACCGCCTCATCGCCGGGCTTTGCCGGGCGGTGGTCGTGGTGGAGGCCCCTCTGGACTCCG
GGGCCCTCATCACCGCCCGCCACGCCCTGGAGCTCGGCAAGGAGGTGCTGGCCGTGCCCGGAAGGCCCACCGACGAGCGT
TCCCTGGGGGCGAACCGCCTCATCCAGGACGGGGCCTACCCGGTGCTCTCCGCCGAGGACGTCCTCTCCTACCTGGGAAT
GTCCGCAAGGCCCAAGCCCCTCCCGGGCCTCTCCCCGGAGGAGGAGGCCCTTTACGCCCTCCTGCAGGAAAAGAAGGAGG
CGCTCCCCGAGACCCTGGCCGCGGCCCTGGGGATCCCCCCGGAGCGGGTGCTCTCCCTCCTCACCCTTTTGGAGCTAAAG
GGCCTGGCCCGGGCCCTCCCGGGAGGGCGCTACGGGCCAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(269-329)

DNA recombination-mediator protein A (DNA_processg_A)

(56-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Thermus thermophilus HB27

98.802

100

0.988
  dprA Vibrio campbellii strain DS40M4

38.547

100

0.413
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.734

87.725

0.401
  dprA Vibrio cholerae strain A1552

37.255

100

0.398

Multiple sequence alignment