Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VP472_RS01780 Genome accession   NZ_CP143632
Coordinates   331018..331455 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. MT(2024)     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326018..336455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS01745 (VP472_01745) - 326612..326770 (-) 159 Protein_303 molybdopterin dinucleotide binding domain-containing protein -
  VP472_RS01750 (VP472_01750) - 326885..328087 (+) 1203 WP_146276088.1 GTP-binding protein -
  VP472_RS01755 (VP472_01755) - 328152..329288 (+) 1137 WP_146276090.1 zinc-dependent alcohol dehydrogenase -
  VP472_RS01760 (VP472_01760) - 329303..329737 (+) 435 WP_021494203.1 RDD family protein -
  VP472_RS01765 (VP472_01765) - 329810..330130 (+) 321 WP_015388719.1 YckD family protein -
  VP472_RS01770 (VP472_01770) - 330350..330579 (+) 230 Protein_308 family 1 glycosylhydrolase -
  VP472_RS01775 (VP472_01775) nin/comJ 330598..330996 (-) 399 WP_077721770.1 competence protein ComJ Regulator
  VP472_RS01780 (VP472_01780) nucA/comI 331018..331455 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VP472_RS01785 (VP472_01785) hxlB 331814..332371 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  VP472_RS01790 (VP472_01790) hxlA 332368..333003 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  VP472_RS01795 (VP472_01795) - 333235..333597 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=930003 VP472_RS01780 WP_003156588.1 331018..331455(-) (nucA/comI) [Bacillus sp. MT(2024)]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=930003 VP472_RS01780 WP_003156588.1 331018..331455(-) (nucA/comI) [Bacillus sp. MT(2024)]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641