Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R8906_RS05860 Genome accession   NZ_AP028346
Coordinates   1114028..1115368 (-) Length   446 a.a.
NCBI ID   WP_002859284.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1109028..1120368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS05835 (B10335_11460) - 1109165..1109935 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8906_RS05840 (B10335_11470) metE 1109947..1112211 (+) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8906_RS05845 (B10335_11480) metF 1112221..1113069 (+) 849 WP_002860436.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R8906_RS05850 (B10335_11490) - 1113091..1113282 (-) 192 WP_002852856.1 membrane protein -
  R8906_RS05855 (B10335_11500) atpB 1113279..1113959 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  R8906_RS05860 (B10335_11510) radA 1114028..1115368 (-) 1341 WP_002859284.1 DNA repair protein RadA Machinery gene
  R8906_RS05865 (B10335_11520) pilA 1115368..1116234 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  R8906_RS05870 (B10335_11530) - 1116234..1116791 (-) 558 WP_002869638.1 TlpA family protein disulfide reductase -
  R8906_RS05875 (B10335_11540) - 1116874..1117500 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  R8906_RS05880 (B10335_11550) rny 1117421..1118974 (+) 1554 WP_002869639.1 ribonuclease Y -
  R8906_RS05885 (B10335_11560) - 1118983..1119540 (+) 558 WP_002852823.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49024.91 Da        Isoelectric Point: 6.9288

>NTDB_id=92998 R8906_RS05860 WP_002859284.1 1114028..1115368(-) (radA) [Campylobacter jejuni strain BCH-10335]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=92998 R8906_RS05860 WP_002859284.1 1114028..1115368(-) (radA) [Campylobacter jejuni strain BCH-10335]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCCAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTACATAAAAAGGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453

Multiple sequence alignment