Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VYI69_RS26135 Genome accession   NZ_CP143576
Coordinates   5740667..5741074 (-) Length   135 a.a.
NCBI ID   WP_003213736.1    Uniprot ID   -
Organism   Pseudomonas yamanorum strain SFB8.6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5735667..5746074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI69_RS26120 (VYI69_26120) - 5737669..5739720 (-) 2052 WP_063026524.1 methyl-accepting chemotaxis protein -
  VYI69_RS26125 (VYI69_26125) - 5739717..5740241 (-) 525 WP_063026522.1 chemotaxis protein CheW -
  VYI69_RS26130 (VYI69_26130) pilH 5740254..5740619 (-) 366 WP_017476512.1 twitching motility response regulator PilH -
  VYI69_RS26135 (VYI69_26135) pilG 5740667..5741074 (-) 408 WP_003213736.1 twitching motility response regulator PilG Regulator
  VYI69_RS26140 (VYI69_26140) gshB 5741314..5742267 (+) 954 WP_330564740.1 glutathione synthase -
  VYI69_RS26145 (VYI69_26145) - 5742345..5743244 (+) 900 WP_218263033.1 energy transducer TonB -
  VYI69_RS26150 (VYI69_26150) - 5743312..5743881 (+) 570 WP_010167675.1 YqgE/AlgH family protein -
  VYI69_RS26155 (VYI69_26155) ruvX 5743881..5744318 (+) 438 WP_330564741.1 Holliday junction resolvase RuvX -
  VYI69_RS26160 (VYI69_26160) pyrR 5744403..5744909 (+) 507 WP_003213746.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VYI69_RS26165 (VYI69_26165) - 5744934..5745938 (+) 1005 WP_063026518.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14868.35 Da        Isoelectric Point: 7.3838

>NTDB_id=929797 VYI69_RS26135 WP_003213736.1 5740667..5741074(-) (pilG) [Pseudomonas yamanorum strain SFB8.6]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALAKIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=929797 VYI69_RS26135 WP_003213736.1 5740667..5741074(-) (pilG) [Pseudomonas yamanorum strain SFB8.6]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACGGCCGAAACACTGTT
GAAGAACGTAGGGTGCGACGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCAAGATTGTTGACCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGTTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGTTGTCTTCCAAGGATGGTCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGTTCTGATCAGTT
TTTGACCAAACCTTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCTATGTACCGGGCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.8

92.593

0.674
  vicR Streptococcus mutans UA159

40.476

93.333

0.378