Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   V1208_RS04825 Genome accession   NZ_CP143562
Coordinates   1085573..1087024 (-) Length   483 a.a.
NCBI ID   WP_178385942.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain GD06     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080573..1092024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1208_RS04800 (V1208_04800) - 1080821..1081450 (+) 630 WP_229697905.1 hypothetical protein -
  V1208_RS04805 (V1208_04805) - 1081420..1082946 (+) 1527 WP_041183414.1 membrane protein -
  V1208_RS04810 (V1208_04810) pilB 1082981..1084714 (+) 1734 WP_014504319.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V1208_RS04815 (V1208_04815) - 1084723..1085232 (-) 510 WP_014504318.1 Fic family protein -
  V1208_RS04820 (V1208_04820) - 1085294..1085500 (-) 207 WP_076342549.1 YhfG family protein -
  V1208_RS04825 (V1208_04825) pilR 1085573..1087024 (-) 1452 WP_178385942.1 sigma-54 dependent transcriptional regulator Regulator
  V1208_RS04830 (V1208_04830) - 1087295..1088908 (-) 1614 WP_014504316.1 HAMP domain-containing sensor histidine kinase -
  V1208_RS04835 (V1208_04835) sucC 1089142..1090311 (+) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  V1208_RS04840 (V1208_04840) sucD 1090336..1091211 (+) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  V1208_RS04845 (V1208_04845) - 1091355..1091579 (+) 225 Protein_921 hypothetical protein -
  V1208_RS04850 (V1208_04850) - 1091651..1092022 (+) 372 WP_014504313.1 DUF559 domain-containing protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52497.23 Da        Isoelectric Point: 6.8291

>NTDB_id=929713 V1208_RS04825 WP_178385942.1 1085573..1087024(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain GD06]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHRDLGELVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGNAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=929713 V1208_RS04825 WP_178385942.1 1085573..1087024(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain GD06]
TTGCGCCGCGCCCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCACCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAGGGACCTGGGCGAGCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGAGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.203

95.652

0.605
  pilR Acinetobacter baumannii strain A118

48.701

95.652

0.466