Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | V1M48_RS17205 | Genome accession | NZ_CP143559 |
| Coordinates | 1516988..1518409 (-) | Length | 473 a.a. |
| NCBI ID | WP_330472593.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain WHSS0915 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1493692..1536231 | 1516988..1518409 | within | 0 |
Gene organization within MGE regions
Location: 1493692..1536231
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V1M48_RS17080 (V1M48_17080) | - | 1493692..1494081 (+) | 390 | WP_009697353.1 | VOC family protein | - |
| V1M48_RS17085 (V1M48_17085) | - | 1494083..1494397 (+) | 315 | WP_005443150.1 | heavy metal-binding domain-containing protein | - |
| V1M48_RS17090 (V1M48_17090) | - | 1494542..1494991 (+) | 450 | WP_005445582.1 | hypothetical protein | - |
| V1M48_RS17095 (V1M48_17095) | - | 1495339..1496148 (+) | 810 | WP_005445576.1 | helix-turn-helix domain-containing protein | - |
| V1M48_RS17100 (V1M48_17100) | - | 1496319..1497107 (+) | 789 | WP_009697355.1 | TetR/AcrR family transcriptional regulator | - |
| V1M48_RS17105 (V1M48_17105) | - | 1497309..1499684 (+) | 2376 | WP_330472590.1 | efflux RND transporter permease subunit | - |
| V1M48_RS17110 (V1M48_17110) | - | 1499726..1500517 (+) | 792 | WP_026000346.1 | outer membrane lipoprotein-sorting protein | - |
| V1M48_RS17115 (V1M48_17115) | - | 1500527..1501708 (+) | 1182 | WP_033008426.1 | hypothetical protein | - |
| V1M48_RS17120 (V1M48_17120) | - | 1501886..1503010 (+) | 1125 | WP_005445565.1 | GGDEF domain-containing protein | - |
| V1M48_RS17125 (V1M48_17125) | pheS | 1503293..1504276 (+) | 984 | WP_005439802.1 | phenylalanine--tRNA ligase subunit alpha | - |
| V1M48_RS17130 (V1M48_17130) | pheT | 1504295..1506682 (+) | 2388 | WP_050924873.1 | phenylalanine--tRNA ligase subunit beta | - |
| V1M48_RS17135 (V1M48_17135) | - | 1506807..1507532 (-) | 726 | WP_017817995.1 | metallophosphoesterase family protein | - |
| V1M48_RS17140 (V1M48_17140) | - | 1507736..1508074 (-) | 339 | WP_110415027.1 | hypothetical protein | - |
| V1M48_RS17145 (V1M48_17145) | - | 1508065..1508448 (-) | 384 | WP_330472591.1 | hypothetical protein | - |
| V1M48_RS17150 (V1M48_17150) | - | 1508448..1508708 (-) | 261 | WP_005445548.1 | hypothetical protein | - |
| V1M48_RS17155 (V1M48_17155) | - | 1509002..1509283 (-) | 282 | WP_330472592.1 | hypothetical protein | - |
| V1M48_RS17160 (V1M48_17160) | - | 1509305..1509544 (-) | 240 | WP_047517048.1 | hypothetical protein | - |
| V1M48_RS17165 (V1M48_17165) | - | 1509727..1510605 (-) | 879 | WP_074050527.1 | AEC family transporter | - |
| V1M48_RS17170 (V1M48_17170) | ihfA | 1511132..1511428 (+) | 297 | WP_005445544.1 | integration host factor subunit alpha | - |
| V1M48_RS17175 (V1M48_17175) | - | 1511572..1512345 (-) | 774 | WP_005445543.1 | phosphoribosylglycinamide formyltransferase | - |
| V1M48_RS17180 (V1M48_17180) | - | 1512682..1513332 (+) | 651 | WP_042606219.1 | thiopurine S-methyltransferase | - |
| V1M48_RS17185 (V1M48_17185) | purT | 1513409..1514584 (-) | 1176 | WP_029791114.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| V1M48_RS17190 (V1M48_17190) | cdd | 1514733..1515620 (-) | 888 | WP_005445539.1 | cytidine deaminase | - |
| V1M48_RS17195 (V1M48_17195) | - | 1515876..1516553 (-) | 678 | WP_005445538.1 | LrgB family protein | - |
| V1M48_RS17200 (V1M48_17200) | - | 1516555..1516929 (-) | 375 | WP_005445537.1 | CidA/LrgA family protein | - |
| V1M48_RS17205 (V1M48_17205) | sbcB | 1516988..1518409 (-) | 1422 | WP_330472593.1 | exodeoxyribonuclease I | Machinery gene |
| V1M48_RS17210 (V1M48_17210) | - | 1518571..1519251 (-) | 681 | WP_330472594.1 | DUF1826 domain-containing protein | - |
| V1M48_RS17215 (V1M48_17215) | - | 1519473..1520846 (-) | 1374 | WP_330472595.1 | L-cystine transporter | - |
| V1M48_RS17220 (V1M48_17220) | - | 1521041..1521736 (-) | 696 | WP_017190320.1 | NAD(P)H-binding protein | - |
| V1M48_RS17225 (V1M48_17225) | - | 1522471..1523082 (+) | 612 | WP_330472596.1 | flavin reductase family protein | - |
| V1M48_RS17230 (V1M48_17230) | cobT | 1523102..1524145 (+) | 1044 | WP_330472597.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| V1M48_RS17235 (V1M48_17235) | - | 1524145..1524951 (+) | 807 | WP_330472598.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| V1M48_RS17240 (V1M48_17240) | cobU | 1524948..1525496 (+) | 549 | WP_330472599.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| V1M48_RS17245 (V1M48_17245) | cobC | 1525493..1526107 (+) | 615 | WP_239969735.1 | alpha-ribazole phosphatase | - |
| V1M48_RS17250 (V1M48_17250) | - | 1526190..1527989 (+) | 1800 | WP_330472600.1 | M3 family oligoendopeptidase | - |
| V1M48_RS17255 (V1M48_17255) | - | 1528228..1529256 (+) | 1029 | WP_047517010.1 | succinylglutamate desuccinylase | - |
| V1M48_RS17260 (V1M48_17260) | btuC | 1529359..1530354 (+) | 996 | WP_330472601.1 | vitamin B12 ABC transporter permease BtuC | - |
| V1M48_RS17265 (V1M48_17265) | btuD | 1530341..1531108 (+) | 768 | WP_080654225.1 | vitamin B12 ABC transporter ATP-binding protein BtuD | - |
| V1M48_RS17270 (V1M48_17270) | - | 1531355..1532536 (+) | 1182 | WP_230689818.1 | hypothetical protein | - |
| V1M48_RS17275 (V1M48_17275) | - | 1532595..1533116 (+) | 522 | WP_045452642.1 | hypothetical protein | - |
| V1M48_RS17280 (V1M48_17280) | - | 1533170..1533526 (+) | 357 | WP_017190311.1 | hypothetical protein | - |
| V1M48_RS17285 (V1M48_17285) | - | 1533690..1534106 (+) | 417 | WP_009697380.1 | lysozyme inhibitor LprI family protein | - |
| V1M48_RS17290 (V1M48_17290) | - | 1534654..1535097 (+) | 444 | WP_330472602.1 | AAA family ATPase | - |
| V1M48_RS17295 (V1M48_17295) | - | 1535458..1536231 (+) | 774 | WP_330472603.1 | nucleotidyltransferase domain-containing protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54539.89 Da Isoelectric Point: 4.9808
>NTDB_id=929690 V1M48_RS17205 WP_330472593.1 1516988..1518409(-) (sbcB) [Vibrio harveyi strain WHSS0915]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVEGLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVEGLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=929690 V1M48_RS17205 WP_330472593.1 1516988..1518409(-) (sbcB) [Vibrio harveyi strain WHSS0915]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCATCCAACCAACAATAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGGGCCTAGCCTCCTAA
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCATCCAACCAACAATAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGGGCCTAGCCTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |