Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   V1502_RS18365 Genome accession   NZ_CP143546
Coordinates   3728153..3729295 (-) Length   380 a.a.
NCBI ID   WP_409252032.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723153..3734295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS18350 (V1502_18350) - 3724723..3725673 (-) 951 WP_409254391.1 methyl-accepting chemotaxis protein -
  V1502_RS18355 (V1502_18355) - 3725674..3726762 (-) 1089 Protein_3552 cache and HAMP domain-containing protein -
  V1502_RS18360 (V1502_18360) degU 3727444..3728124 (-) 681 WP_409254392.1 response regulator Regulator
  V1502_RS18365 (V1502_18365) degS 3728153..3729295 (-) 1143 WP_409252032.1 sensor histidine kinase Regulator
  V1502_RS18370 (V1502_18370) - 3729787..3730419 (+) 633 WP_409252033.1 YigZ family protein -
  V1502_RS18375 (V1502_18375) - 3730506..3731474 (+) 969 WP_409252034.1 LCP family protein -
  V1502_RS18380 (V1502_18380) - 3731519..3732589 (-) 1071 WP_409252035.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 43610.95 Da        Isoelectric Point: 7.0732

>NTDB_id=929578 V1502_RS18365 WP_409252032.1 3728153..3729295(-) (degS) [Bacillus sp. SCS-153A]
MSIKKVNTKMLDNILEQMIDTVGRSKDDVFEIGEQCRQDYESITKELKVIKESVFKVIQEGDELERKSRFARKRLSEVSQ
HFQKFSEGQVREAYEKAHDLQMKLSLNRQTESRLRERRDDLERRIKNLEDTIDRAEQLNSQISVVLNYLSSDLKQVGAAL
EDAKERHDFGLRIIEAQEEERKKLSREIHDGPAQMLANVLLRSDLIDRVYRENGPMAALGEIKDLKKMVRSALYEVRRII
YDLRPMALDDLGLVPTLTKYLSTIEEYHKSTNIRFVNLGQEKRLPSKYEVALFRLIQESVQNALKHSGASEIQVKLEIGK
DTVTVIIKDDGKGFDIKQKKNGSFGIMGMKERVEILDGDMSIDSNPGSGTVVLVQVPLTA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=929578 V1502_RS18365 WP_409252032.1 3728153..3729295(-) (degS) [Bacillus sp. SCS-153A]
GTGTCCATTAAAAAGGTGAACACCAAGATGTTGGATAACATTTTAGAGCAGATGATCGACACGGTCGGCCGCAGTAAAGA
TGATGTTTTTGAAATCGGCGAACAGTGTCGGCAGGATTATGAATCCATCACTAAAGAACTAAAAGTCATAAAAGAATCTG
TATTCAAGGTCATCCAGGAAGGTGACGAGCTCGAGCGTAAGTCAAGATTTGCAAGGAAGAGGCTCTCGGAGGTCAGTCAG
CACTTTCAAAAGTTCTCCGAGGGGCAGGTAAGGGAAGCATATGAAAAAGCACATGACCTGCAAATGAAGCTTTCCTTGAA
CAGGCAGACAGAGTCCAGGCTGCGAGAGCGAAGAGACGATCTGGAACGCCGGATTAAAAATCTGGAAGATACCATCGATA
GGGCCGAACAGTTGAACTCTCAAATTTCCGTTGTTCTGAACTACTTGAGCAGTGATTTAAAACAGGTCGGTGCCGCCCTT
GAAGATGCAAAAGAGAGACACGACTTCGGCCTTCGGATCATCGAGGCTCAAGAGGAAGAACGAAAAAAGCTTTCAAGGGA
GATTCACGATGGACCTGCACAAATGCTGGCTAATGTCCTCCTGAGATCGGACCTGATTGACAGGGTCTACCGGGAGAATG
GACCGATGGCTGCACTGGGAGAAATCAAGGACCTGAAAAAAATGGTTCGTTCCGCCTTGTATGAAGTCCGCAGGATCATC
TATGACTTAAGGCCAATGGCGTTGGATGATTTAGGTTTGGTCCCGACCCTCACAAAATACTTAAGCACTATCGAAGAGTA
TCATAAGAGTACCAATATTAGGTTTGTAAACCTTGGGCAGGAAAAAAGGCTGCCTTCCAAATATGAAGTTGCCTTATTCA
GATTAATTCAGGAATCCGTGCAAAATGCCCTGAAACACTCTGGAGCTTCCGAAATTCAAGTGAAGTTGGAAATAGGCAAA
GACACAGTCACCGTCATCATTAAAGACGATGGCAAAGGATTCGACATAAAGCAAAAGAAAAACGGATCCTTCGGCATCAT
GGGCATGAAGGAACGGGTAGAGATCCTTGATGGGGACATGAGTATTGATTCCAATCCCGGGTCTGGCACCGTTGTCCTTG
TCCAGGTACCATTAACAGCATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(289-379)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

59.896

100

0.605